(5 nodes) U2 snRNA binding network (Coprinopsis marcescibilis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A5C3K9U5	Uncharacterized protein. (348 aa)
	A0A5C3LCB7	Small nuclear ribonucleo protein polypeptide A. (247 aa)
	A0A5C3L703	RNA-binding domain-containing protein. (252 aa)
	A0A5C3L4S9	Pre-mRNA-processing-splicing factor. (2352 aa)
	A0A5C3KPW8	Pre-mRNA-splicing factor RSE1. (1213 aa)

Your Current Organism:

Coprinopsis marcescibilis

NCBI taxonomy Id: 230819
Other names: C. marcescibilis, Coprinopsis marcescibilis (Britzelm.) Oerstadius & E. Larss. 2008, Psathyrella marcescibilis

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A5C3K9U5	A0A5C3KPW8	Uncharacterized protein.	Pre-mRNA-splicing factor RSE1.	0.959
A0A5C3K9U5	A0A5C3L703	Uncharacterized protein.	RNA-binding domain-containing protein.	0.843
A0A5C3K9U5	A0A5C3LCB7	Uncharacterized protein.	Small nuclear ribonucleo protein polypeptide A.	0.900
A0A5C3KPW8	A0A5C3K9U5	Pre-mRNA-splicing factor RSE1.	Uncharacterized protein.	0.959
A0A5C3KPW8	A0A5C3L4S9	Pre-mRNA-splicing factor RSE1.	Pre-mRNA-processing-splicing factor.	0.959
A0A5C3KPW8	A0A5C3L703	Pre-mRNA-splicing factor RSE1.	RNA-binding domain-containing protein.	0.954
A0A5C3KPW8	A0A5C3LCB7	Pre-mRNA-splicing factor RSE1.	Small nuclear ribonucleo protein polypeptide A.	0.995
A0A5C3L4S9	A0A5C3KPW8	Pre-mRNA-processing-splicing factor.	Pre-mRNA-splicing factor RSE1.	0.959
A0A5C3L4S9	A0A5C3L703	Pre-mRNA-processing-splicing factor.	RNA-binding domain-containing protein.	0.843
A0A5C3L4S9	A0A5C3LCB7	Pre-mRNA-processing-splicing factor.	Small nuclear ribonucleo protein polypeptide A.	0.900
A0A5C3L703	A0A5C3K9U5	RNA-binding domain-containing protein.	Uncharacterized protein.	0.843
A0A5C3L703	A0A5C3KPW8	RNA-binding domain-containing protein.	Pre-mRNA-splicing factor RSE1.	0.954
A0A5C3L703	A0A5C3L4S9	RNA-binding domain-containing protein.	Pre-mRNA-processing-splicing factor.	0.843
A0A5C3L703	A0A5C3LCB7	RNA-binding domain-containing protein.	Small nuclear ribonucleo protein polypeptide A.	0.996
A0A5C3LCB7	A0A5C3K9U5	Small nuclear ribonucleo protein polypeptide A.	Uncharacterized protein.	0.900
A0A5C3LCB7	A0A5C3KPW8	Small nuclear ribonucleo protein polypeptide A.	Pre-mRNA-splicing factor RSE1.	0.995
A0A5C3LCB7	A0A5C3L4S9	Small nuclear ribonucleo protein polypeptide A.	Pre-mRNA-processing-splicing factor.	0.900
A0A5C3LCB7	A0A5C3L703	Small nuclear ribonucleo protein polypeptide A.	RNA-binding domain-containing protein.	0.996