(5 nodes) Kynurenine metabolic process, and Urea active transporter network (Ustilago maydis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	dur3-1	Dur3 urea permease 1; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (717 aa)
	UMAG_12082	Chromosome 1, whole genome shotgun sequence. (312 aa)
	UMAG_10703	Aminotran_1_2 domain-containing protein. (459 aa)
	UMAG_03832	Chromosome 10, whole genome shotgun sequence. (1102 aa)
	BNA4	Kynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid. (600 aa)

Your Current Organism:

Ustilago maydis

NCBI taxonomy Id: 237631
Other names: U. maydis 521, Ustilago maydis 521

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BNA4	UMAG_03832	Q4P0N0	A0A0D1E0K2	Kynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid.	Chromosome 10, whole genome shotgun sequence.	0.633
BNA4	UMAG_10703	Q4P0N0	A0A0D1DW71	Kynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid.	Aminotran_1_2 domain-containing protein.	0.660
BNA4	UMAG_12082	Q4P0N0	A0A0D1CZJ5	Kynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid.	Chromosome 1, whole genome shotgun sequence.	0.424
BNA4	dur3-1	Q4P0N0	A0A0D1C6Q7	Kynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid.	Dur3 urea permease 1; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	0.649
UMAG_03832	BNA4	A0A0D1E0K2	Q4P0N0	Chromosome 10, whole genome shotgun sequence.	Kynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid.	0.633
UMAG_03832	UMAG_10703	A0A0D1E0K2	A0A0D1DW71	Chromosome 10, whole genome shotgun sequence.	Aminotran_1_2 domain-containing protein.	0.475
UMAG_03832	UMAG_12082	A0A0D1E0K2	A0A0D1CZJ5	Chromosome 10, whole genome shotgun sequence.	Chromosome 1, whole genome shotgun sequence.	0.461
UMAG_10703	BNA4	A0A0D1DW71	Q4P0N0	Aminotran_1_2 domain-containing protein.	Kynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid.	0.660
UMAG_10703	UMAG_03832	A0A0D1DW71	A0A0D1E0K2	Aminotran_1_2 domain-containing protein.	Chromosome 10, whole genome shotgun sequence.	0.475
UMAG_10703	UMAG_12082	A0A0D1DW71	A0A0D1CZJ5	Aminotran_1_2 domain-containing protein.	Chromosome 1, whole genome shotgun sequence.	0.909
UMAG_12082	BNA4	A0A0D1CZJ5	Q4P0N0	Chromosome 1, whole genome shotgun sequence.	Kynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid.	0.424
UMAG_12082	UMAG_03832	A0A0D1CZJ5	A0A0D1E0K2	Chromosome 1, whole genome shotgun sequence.	Chromosome 10, whole genome shotgun sequence.	0.461
UMAG_12082	UMAG_10703	A0A0D1CZJ5	A0A0D1DW71	Chromosome 1, whole genome shotgun sequence.	Aminotran_1_2 domain-containing protein.	0.909
dur3-1	BNA4	A0A0D1C6Q7	Q4P0N0	Dur3 urea permease 1; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	Kynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid.	0.649