13 items (Ustilago maydis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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textmining

co-expression

protein homology

Your Input:
	UMAG_03227	Chromosome 8, whole genome shotgun sequence. (273 aa)
	UMAG_10858	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (129 aa)
	UMAG_01553	Uncharacterized protein. (289 aa)
	UMAG_05410	Chromosome 19, whole genome shotgun sequence. (598 aa)
	UMAG_04055	CID domain-containing protein. (589 aa)
	UMAG_10662	Chromosome 10, whole genome shotgun sequence. (237 aa)
	UMAG_04192	Chromosome 12, whole genome shotgun sequence. (438 aa)
	UMAG_11550	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (109 aa)
	UMAG_10602	Uncharacterized protein. (2238 aa)
	UMAG_02607	Putative chromatin remodeling complex ATPase subunit. (1108 aa)
	UMAG_15080	Uncharacterized protein. (612 aa)
	RAT1	5'-3' exoribonuclease 2; Possesses 5'->3' exoribonuclease activity. Required for the processing of nuclear mRNA and rRNA precursors. May promote termination of transcription by RNA polymerase II (By similarity); Belongs to the 5'-3' exonuclease family. XRN2/RAT1 subfamily. (1233 aa)
	YSH1	Endoribonuclease YSH1; Component of the cleavage factor I (CF I) involved in pre- mRNA 3'-end processing; Belongs to the metallo-beta-lactamase superfamily. RNA- metabolizing metallo-beta-lactamase-like family. CPSF2/YSH1 subfamily. (880 aa)

Your Current Organism:

Ustilago maydis

NCBI taxonomy Id: 237631
Other names: U. maydis 521, Ustilago maydis 521

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RAT1	UMAG_03227	Q4P149	A0A0D1E248	5'-3' exoribonuclease 2; Possesses 5'->3' exoribonuclease activity. Required for the processing of nuclear mRNA and rRNA precursors. May promote termination of transcription by RNA polymerase II (By similarity); Belongs to the 5'-3' exonuclease family. XRN2/RAT1 subfamily.	Chromosome 8, whole genome shotgun sequence.	0.556
RAT1	UMAG_04055	Q4P149	A0A0D1DUT5	5'-3' exoribonuclease 2; Possesses 5'->3' exoribonuclease activity. Required for the processing of nuclear mRNA and rRNA precursors. May promote termination of transcription by RNA polymerase II (By similarity); Belongs to the 5'-3' exonuclease family. XRN2/RAT1 subfamily.	CID domain-containing protein.	0.610
RAT1	UMAG_10602	Q4P149	A0A0D1DZJ5	5'-3' exoribonuclease 2; Possesses 5'->3' exoribonuclease activity. Required for the processing of nuclear mRNA and rRNA precursors. May promote termination of transcription by RNA polymerase II (By similarity); Belongs to the 5'-3' exonuclease family. XRN2/RAT1 subfamily.	Uncharacterized protein.	0.644
RAT1	UMAG_10662	Q4P149	A0A0D1DV92	5'-3' exoribonuclease 2; Possesses 5'->3' exoribonuclease activity. Required for the processing of nuclear mRNA and rRNA precursors. May promote termination of transcription by RNA polymerase II (By similarity); Belongs to the 5'-3' exonuclease family. XRN2/RAT1 subfamily.	Chromosome 10, whole genome shotgun sequence.	0.513
RAT1	YSH1	Q4P149	Q4PEJ3	5'-3' exoribonuclease 2; Possesses 5'->3' exoribonuclease activity. Required for the processing of nuclear mRNA and rRNA precursors. May promote termination of transcription by RNA polymerase II (By similarity); Belongs to the 5'-3' exonuclease family. XRN2/RAT1 subfamily.	Endoribonuclease YSH1; Component of the cleavage factor I (CF I) involved in pre- mRNA 3'-end processing; Belongs to the metallo-beta-lactamase superfamily. RNA- metabolizing metallo-beta-lactamase-like family. CPSF2/YSH1 subfamily.	0.589
UMAG_01553	UMAG_10858	A0A0D1CVD3	A0A0D1CIL2	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.589
UMAG_01553	UMAG_11550	A0A0D1CVD3	A0A0D1DYK5	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.570
UMAG_02607	UMAG_10858	A0A0D1E464	A0A0D1CIL2	Putative chromatin remodeling complex ATPase subunit.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.415
UMAG_03227	RAT1	A0A0D1E248	Q4P149	Chromosome 8, whole genome shotgun sequence.	5'-3' exoribonuclease 2; Possesses 5'->3' exoribonuclease activity. Required for the processing of nuclear mRNA and rRNA precursors. May promote termination of transcription by RNA polymerase II (By similarity); Belongs to the 5'-3' exonuclease family. XRN2/RAT1 subfamily.	0.556
UMAG_03227	UMAG_10858	A0A0D1E248	A0A0D1CIL2	Chromosome 8, whole genome shotgun sequence.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.426
UMAG_04055	RAT1	A0A0D1DUT5	Q4P149	CID domain-containing protein.	5'-3' exoribonuclease 2; Possesses 5'->3' exoribonuclease activity. Required for the processing of nuclear mRNA and rRNA precursors. May promote termination of transcription by RNA polymerase II (By similarity); Belongs to the 5'-3' exonuclease family. XRN2/RAT1 subfamily.	0.610
UMAG_04055	UMAG_10602	A0A0D1DUT5	A0A0D1DZJ5	CID domain-containing protein.	Uncharacterized protein.	0.603
UMAG_04055	UMAG_10662	A0A0D1DUT5	A0A0D1DV92	CID domain-containing protein.	Chromosome 10, whole genome shotgun sequence.	0.989
UMAG_04055	YSH1	A0A0D1DUT5	Q4PEJ3	CID domain-containing protein.	Endoribonuclease YSH1; Component of the cleavage factor I (CF I) involved in pre- mRNA 3'-end processing; Belongs to the metallo-beta-lactamase superfamily. RNA- metabolizing metallo-beta-lactamase-like family. CPSF2/YSH1 subfamily.	0.995
UMAG_05410	UMAG_10858	A0A0D1DPQ2	A0A0D1CIL2	Chromosome 19, whole genome shotgun sequence.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.507
UMAG_05410	UMAG_11550	A0A0D1DPQ2	A0A0D1DYK5	Chromosome 19, whole genome shotgun sequence.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.507
UMAG_10602	RAT1	A0A0D1DZJ5	Q4P149	Uncharacterized protein.	5'-3' exoribonuclease 2; Possesses 5'->3' exoribonuclease activity. Required for the processing of nuclear mRNA and rRNA precursors. May promote termination of transcription by RNA polymerase II (By similarity); Belongs to the 5'-3' exonuclease family. XRN2/RAT1 subfamily.	0.644
UMAG_10602	UMAG_04055	A0A0D1DZJ5	A0A0D1DUT5	Uncharacterized protein.	CID domain-containing protein.	0.603
UMAG_10602	UMAG_10662	A0A0D1DZJ5	A0A0D1DV92	Uncharacterized protein.	Chromosome 10, whole genome shotgun sequence.	0.529
UMAG_10602	YSH1	A0A0D1DZJ5	Q4PEJ3	Uncharacterized protein.	Endoribonuclease YSH1; Component of the cleavage factor I (CF I) involved in pre- mRNA 3'-end processing; Belongs to the metallo-beta-lactamase superfamily. RNA- metabolizing metallo-beta-lactamase-like family. CPSF2/YSH1 subfamily.	0.453