STRINGSTRING
speE speE RB3208 RB3208 RB3210 RB3210 RB3212 RB3212 RB3213 RB3213 speD speD RB3221 RB3221
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
speEPutative spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine. (514 aa)
RB3208Hypothetical protein-transmembrane prediction. (95 aa)
RB3210Hypothetical protein. (96 aa)
RB3212Hypothetical protein-signal peptide prediction. (54 aa)
RB3213Hypothetical protein-transmembrane prediction; PMID: 11823852. (527 aa)
speDProbable S-adenosylmethionine decarboxylase proenzyme; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine. (164 aa)
RB3221Best DB hits: BLAST: pir:E69789; hypothetical protein ydjI - Bacillus subtilis -----; E=3e-25 gb:AAK05447.1; AE006367_3 (AE006367) UNKNOWN PROTEIN [Lactococcus; E=6e-06 ddbj:BAB05524.1; (AP001513) BH1805~unknown conserved protein in; E=7e-05. (406 aa)
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.