(5 nodes) Domain present in proteins, which are involved in regulation of nuclear pre-mRNA, and Spliceosomal complex disassembly network (Coccidioides immitis RS)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CIMG_09165	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43. (769 aa)
	CIMG_06535	CID domain-containing protein. (596 aa)
	CIMG_03619	U2-associated protein SR140. (816 aa)
	CIMG_04119	G-patch DNA repair protein. (528 aa)
	CIMG_00680	U2 small nuclear ribonucleoprotein A. (256 aa)

Your Current Organism:

Coccidioides immitis RS

NCBI taxonomy Id: 246410
Other names: C. immitis RS

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CIMG_00680	CIMG_03619	J3KHI3	J3KBS2	U2 small nuclear ribonucleoprotein A.	U2-associated protein SR140.	0.961
CIMG_00680	CIMG_04119	J3KHI3	J3KCU3	U2 small nuclear ribonucleoprotein A.	G-patch DNA repair protein.	0.980
CIMG_00680	CIMG_06535	J3KHI3	A0A0E1RWT4	U2 small nuclear ribonucleoprotein A.	CID domain-containing protein.	0.995
CIMG_00680	CIMG_09165	J3KHI3	A0A0E1RV55	U2 small nuclear ribonucleoprotein A.	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43.	0.998
CIMG_03619	CIMG_00680	J3KBS2	J3KHI3	U2-associated protein SR140.	U2 small nuclear ribonucleoprotein A.	0.961
CIMG_03619	CIMG_04119	J3KBS2	J3KCU3	U2-associated protein SR140.	G-patch DNA repair protein.	0.996
CIMG_03619	CIMG_06535	J3KBS2	A0A0E1RWT4	U2-associated protein SR140.	CID domain-containing protein.	0.999
CIMG_03619	CIMG_09165	J3KBS2	A0A0E1RV55	U2-associated protein SR140.	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43.	0.974
CIMG_04119	CIMG_00680	J3KCU3	J3KHI3	G-patch DNA repair protein.	U2 small nuclear ribonucleoprotein A.	0.980
CIMG_04119	CIMG_03619	J3KCU3	J3KBS2	G-patch DNA repair protein.	U2-associated protein SR140.	0.996
CIMG_04119	CIMG_06535	J3KCU3	A0A0E1RWT4	G-patch DNA repair protein.	CID domain-containing protein.	0.999
CIMG_04119	CIMG_09165	J3KCU3	A0A0E1RV55	G-patch DNA repair protein.	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43.	0.998
CIMG_06535	CIMG_00680	A0A0E1RWT4	J3KHI3	CID domain-containing protein.	U2 small nuclear ribonucleoprotein A.	0.995
CIMG_06535	CIMG_03619	A0A0E1RWT4	J3KBS2	CID domain-containing protein.	U2-associated protein SR140.	0.999
CIMG_06535	CIMG_04119	A0A0E1RWT4	J3KCU3	CID domain-containing protein.	G-patch DNA repair protein.	0.999
CIMG_06535	CIMG_09165	A0A0E1RWT4	A0A0E1RV55	CID domain-containing protein.	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43.	0.997
CIMG_09165	CIMG_00680	A0A0E1RV55	J3KHI3	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43.	U2 small nuclear ribonucleoprotein A.	0.998
CIMG_09165	CIMG_03619	A0A0E1RV55	J3KBS2	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43.	U2-associated protein SR140.	0.974
CIMG_09165	CIMG_04119	A0A0E1RV55	J3KCU3	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43.	G-patch DNA repair protein.	0.998
CIMG_09165	CIMG_06535	A0A0E1RV55	A0A0E1RWT4	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43.	CID domain-containing protein.	0.997