(36 nodes) Phosphopantetheine binding ACP domain network (Streptomyces sp. C)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EFL20241.1	Polyketide synthase type I. (1616 aa)
	EFL20240.1	Polyketide synthase type I. (2834 aa)
	EFL20234.1	Modular polyketide synthase. (4478 aa)
	EFL20232.1	Polyketide synthase type I. (1898 aa)
	EFL20219.1	Modular polyketide synthase. (2293 aa)
	EFL20218.1	Modular polyketide synthase. (3748 aa)
	EFL20217.1	Lasalocid modular polyketide synthase. (1248 aa)
	EFL20216.1	Modular polyketide synthase; Truncated CDS. (611 aa)
	EFL20214.1	Modular polyketide synthase. (3116 aa)
	EFL20213.1	Modular polyketide synthase. (1660 aa)
	EFL20212.1	Rifamycin polyketide synthase. (2004 aa)
	EFL20211.1	Lasalocid modular polyketide synthase. (4488 aa)
	EFL20200.1	Peptide carrier protein. (95 aa)
	EFL20198.1	Malonate decarboxylase, epsilon subunit. (473 aa)
	EFL20195.1	Predicted protein. (93 aa)
	EFL20178.1	Predicted protein. (104 aa)
	EFL20177.1	Modular polyketide synthase. (1351 aa)
	EFL20078.1	Blue-pigment synthetase. (1283 aa)
	EFL20065.1	Aur1K. (125 aa)
	EFL20062.1	Aur1F. (89 aa)
	EFL20052.1	Conserved hypothetical protein. (90 aa)
	EFL19875.1	O-succinylbenzoate-CoA ligase. (580 aa)
	EFL19872.1	Thioesterase. (332 aa)
	EFL19619.1	Predicted protein. (292 aa)
	EFL19350.1	Predicted protein. (650 aa)
	EFL18702.1	Predicted protein. (114 aa)
	EFL18700.1	Predicted protein. (98 aa)
	acpS-3	Predicted protein; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family. (257 aa)
	EFL18157.1	Acyl carrier protein. (87 aa)
	EFL17235.1	Acyl carrier protein. (87 aa)
	EFL17215.1	Predicted protein. (136 aa)
	acpP	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. (82 aa)
	EFL13775.1	Peptide synthetase. (1469 aa)
	EFL13774.1	Predicted protein. (1998 aa)
	EFL13404.1	Acyl carrier protein. (84 aa)
	EFL13141.1	Non-ribosomal peptide synthetase. (766 aa)

Your Current Organism:

Streptomyces sp. C

NCBI taxonomy Id: 253839
Other names: S. sp. C

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFL13141.1	EFL13404.1	SSNG_00393	SSNG_00656	Non-ribosomal peptide synthetase.	Acyl carrier protein.	0.423
EFL13141.1	EFL17215.1	SSNG_00393	SSNG_04467	Non-ribosomal peptide synthetase.	Predicted protein.	0.423
EFL13141.1	EFL17235.1	SSNG_00393	SSNG_04487	Non-ribosomal peptide synthetase.	Acyl carrier protein.	0.423
EFL13141.1	EFL18157.1	SSNG_00393	SSNG_05409	Non-ribosomal peptide synthetase.	Acyl carrier protein.	0.423
EFL13141.1	EFL18700.1	SSNG_00393	SSNG_05952	Non-ribosomal peptide synthetase.	Predicted protein.	0.995
EFL13141.1	EFL19350.1	SSNG_00393	SSNG_06602	Non-ribosomal peptide synthetase.	Predicted protein.	0.965
EFL13141.1	EFL19619.1	SSNG_00393	SSNG_06871	Non-ribosomal peptide synthetase.	Predicted protein.	0.879
EFL13141.1	EFL20052.1	SSNG_00393	SSNG_07304	Non-ribosomal peptide synthetase.	Conserved hypothetical protein.	0.512
EFL13141.1	EFL20062.1	SSNG_00393	SSNG_07314	Non-ribosomal peptide synthetase.	Aur1F.	0.557
EFL13141.1	EFL20065.1	SSNG_00393	SSNG_07317	Non-ribosomal peptide synthetase.	Aur1K.	0.988
EFL13141.1	EFL20078.1	SSNG_00393	SSNG_07330	Non-ribosomal peptide synthetase.	Blue-pigment synthetase.	0.705
EFL13141.1	EFL20177.1	SSNG_00393	SSNG_07429	Non-ribosomal peptide synthetase.	Modular polyketide synthase.	0.990
EFL13141.1	EFL20178.1	SSNG_00393	SSNG_07430	Non-ribosomal peptide synthetase.	Predicted protein.	0.572
EFL13141.1	EFL20198.1	SSNG_00393	SSNG_07450	Non-ribosomal peptide synthetase.	Malonate decarboxylase, epsilon subunit.	0.493
EFL13141.1	EFL20200.1	SSNG_00393	SSNG_07452	Non-ribosomal peptide synthetase.	Peptide carrier protein.	0.489
EFL13141.1	EFL20211.1	SSNG_00393	SSNG_07463	Non-ribosomal peptide synthetase.	Lasalocid modular polyketide synthase.	0.981
EFL13141.1	EFL20212.1	SSNG_00393	SSNG_07464	Non-ribosomal peptide synthetase.	Rifamycin polyketide synthase.	0.970
EFL13141.1	EFL20213.1	SSNG_00393	SSNG_07465	Non-ribosomal peptide synthetase.	Modular polyketide synthase.	0.970
EFL13141.1	EFL20214.1	SSNG_00393	SSNG_07466	Non-ribosomal peptide synthetase.	Modular polyketide synthase.	0.981
EFL13141.1	EFL20216.1	SSNG_00393	SSNG_07468	Non-ribosomal peptide synthetase.	Modular polyketide synthase; Truncated CDS.	0.981