(72 nodes) Glyoxylate and dicarboxylate metabolism network (Bacillus humi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_001439915_01402	Unannotated protein. (444 aa)
	GCA_001439915_00800	Unannotated protein. (469 aa)
	GCA_001439915_04777	Unannotated protein. (158 aa)
	GCA_001439915_04776	Unannotated protein. (313 aa)
	GCA_001439915_04774	Unannotated protein. (372 aa)
	GCA_001439915_04740	Unannotated protein. (526 aa)
	GCA_001439915_04725	Unannotated protein. (572 aa)
	GCA_001439915_04478	Unannotated protein. (57 aa)
	GCA_001439915_04404	Unannotated protein. (240 aa)
	GCA_001439915_04288	Unannotated protein. (329 aa)
	GCA_001439915_04249	Unannotated protein. (127 aa)
	GCA_001439915_04248	Unannotated protein. (119 aa)
	GCA_001439915_04102	Unannotated protein. (486 aa)
	GCA_001439915_04101	Unannotated protein. (448 aa)
	GCA_001439915_04100	Unannotated protein. (368 aa)
	GCA_001439915_03667	Unannotated protein. (185 aa)
	GCA_001439915_03624	Unannotated protein. (212 aa)
	GCA_001439915_03613	Unannotated protein. (318 aa)
	GCA_001439915_03609	Unannotated protein. (353 aa)
	GCA_001439915_03505	Unannotated protein. (396 aa)
	GCA_001439915_03484	Unannotated protein. (179 aa)
	GCA_001439915_03438	Unannotated protein. (413 aa)
	GCA_001439915_03409	Unannotated protein. (1086 aa)
	GCA_001439915_03404	Unannotated protein. (392 aa)
	GCA_001439915_03289	Unannotated protein. (569 aa)
	GCA_001439915_03114	Unannotated protein. (139 aa)
	GCA_001439915_03110	Unannotated protein. (283 aa)
	GCA_001439915_03109	Unannotated protein. (486 aa)
	GCA_001439915_02885	Unannotated protein. (394 aa)
	GCA_001439915_02874	Unannotated protein. (295 aa)
	GCA_001439915_02678	Unannotated protein. (266 aa)
	GCA_001439915_02652	Unannotated protein. (381 aa)
	GCA_001439915_02593	Unannotated protein. (473 aa)
	GCA_001439915_02589	Unannotated protein. (632 aa)
	GCA_001439915_02588	Unannotated protein. (732 aa)
	GCA_001439915_02580	Unannotated protein. (139 aa)
	GCA_001439915_02579	Unannotated protein. (516 aa)
	GCA_001439915_02570	Unannotated protein. (379 aa)
	GCA_001439915_02548	Unannotated protein. (389 aa)
	GCA_001439915_02540	Unannotated protein. (366 aa)
	GCA_001439915_02537	Unannotated protein. (308 aa)
	GCA_001439915_02529	Unannotated protein. (395 aa)
	GCA_001439915_02152	Unannotated protein. (390 aa)
	GCA_001439915_02150	Unannotated protein. (379 aa)
	GCA_001439915_02149	Unannotated protein. (150 aa)
	GCA_001439915_02132	Unannotated protein. (311 aa)
	GCA_001439915_02109	Unannotated protein. (391 aa)
	GCA_001439915_01742	Unannotated protein. (341 aa)
	GCA_001439915_01719	Unannotated protein. (397 aa)
	GCA_001439915_01561	Unannotated protein. (387 aa)
	GCA_001439915_01465	Unannotated protein. (275 aa)
	GCA_001439915_01464	Unannotated protein. (206 aa)
	GCA_001439915_01443	Unannotated protein. (95 aa)
	GCA_001439915_01378	Unannotated protein. (902 aa)
	GCA_001439915_01262	Unannotated protein. (384 aa)
	GCA_001439915_01257	Unannotated protein. (509 aa)
	GCA_001439915_01206	Unannotated protein. (318 aa)
	GCA_001439915_01153	Unannotated protein. (214 aa)
	GCA_001439915_01117	Unannotated protein. (524 aa)
	GCA_001439915_01018	Unannotated protein. (241 aa)
	GCA_001439915_00857	Unannotated protein. (514 aa)
	GCA_001439915_00836	Unannotated protein. (325 aa)
	GCA_001439915_00834	Unannotated protein. (205 aa)
	GCA_001439915_00068	Unannotated protein. (250 aa)
	GCA_001439915_00146	Unannotated protein. (118 aa)
	GCA_001439915_00271	Unannotated protein. (894 aa)
	GCA_001439915_00288	Unannotated protein. (529 aa)
	GCA_001439915_00289	Unannotated protein. (425 aa)
	GCA_001439915_00425	Unannotated protein. (131 aa)
	GCA_001439915_00610	Unannotated protein. (441 aa)
	GCA_001439915_00631	Unannotated protein. (331 aa)
	GCA_001439915_00751	Unannotated protein. (787 aa)

Your Current Organism:

Bacillus humi

NCBI taxonomy Id: 263474
Other names: B. humi, Bacillus humi Heyrman et al. 2005, DSM 16318, LMG 22167, LMG:22167

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_001439915_00068	GCA_001439915_00288	Unannotated protein.	Unannotated protein.	0.456
GCA_001439915_00068	GCA_001439915_04288	Unannotated protein.	Unannotated protein.	0.459
GCA_001439915_00146	GCA_001439915_03438	Unannotated protein.	Unannotated protein.	0.577
GCA_001439915_00146	GCA_001439915_04249	Unannotated protein.	Unannotated protein.	0.847
GCA_001439915_00271	GCA_001439915_00288	Unannotated protein.	Unannotated protein.	0.667
GCA_001439915_00271	GCA_001439915_00289	Unannotated protein.	Unannotated protein.	0.797
GCA_001439915_00271	GCA_001439915_01378	Unannotated protein.	Unannotated protein.	0.513
GCA_001439915_00271	GCA_001439915_02132	Unannotated protein.	Unannotated protein.	0.450
GCA_001439915_00271	GCA_001439915_02540	Unannotated protein.	Unannotated protein.	0.980
GCA_001439915_00271	GCA_001439915_04288	Unannotated protein.	Unannotated protein.	0.434
GCA_001439915_00271	GCA_001439915_04774	Unannotated protein.	Unannotated protein.	0.983
GCA_001439915_00271	GCA_001439915_04776	Unannotated protein.	Unannotated protein.	0.450
GCA_001439915_00288	GCA_001439915_00068	Unannotated protein.	Unannotated protein.	0.456
GCA_001439915_00288	GCA_001439915_00271	Unannotated protein.	Unannotated protein.	0.667
GCA_001439915_00288	GCA_001439915_00289	Unannotated protein.	Unannotated protein.	0.999
GCA_001439915_00288	GCA_001439915_00610	Unannotated protein.	Unannotated protein.	0.666
GCA_001439915_00288	GCA_001439915_00751	Unannotated protein.	Unannotated protein.	0.522
GCA_001439915_00288	GCA_001439915_00857	Unannotated protein.	Unannotated protein.	0.489
GCA_001439915_00288	GCA_001439915_01117	Unannotated protein.	Unannotated protein.	0.759
GCA_001439915_00288	GCA_001439915_01153	Unannotated protein.	Unannotated protein.	0.586