STRINGSTRING
HY04_10630 HY04_10630 sad sad aspC_2 aspC_2 HY04_07515 HY04_07515 HY04_06160 HY04_06160 tpl_1 tpl_1 aspC_1 aspC_1 HY04_13995 HY04_13995 ycgM ycgM HY04_02405 HY04_02405 puo puo hisC hisC HY04_10665 HY04_10665 hpd hpd
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
HY04_10630Fumarylacetoacetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (415 aa)
sadAldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (428 aa)
aspC_2Aspartate aminotransferase; Catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology. (401 aa)
HY04_07515Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1100 aa)
HY04_06160Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (441 aa)
tpl_1Tryptophanase; Derived by automated computational analysis using gene prediction method: Protein Homology. (458 aa)
aspC_1Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (417 aa)
HY04_13995Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (399 aa)
ycgM2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (202 aa)
HY04_02405Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (341 aa)
puoAmine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (348 aa)
hisCHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (341 aa)
HY04_10665Homogentisate 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (395 aa)
hpd4-hydroxyphenylpyruvate dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (376 aa)
Your Current Organism:
Chryseobacterium antarcticum
NCBI taxonomy Id: 266748
Other names: C. antarcticum, Chryseobacterium antarcticum (Yi et al. 2005) Kampfer et al. 2009 emend. Hahnke et al. 2016, Chryseobacterium sp. AT1013, DSM 17047, IMSNU 14040, JCM 12381, KCTC 12225, NCTC 13489, Sejongia antarctica, Sejongia antarctica Yi et al. 2005, strain AT1013
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