STRINGSTRING
HY04_08060 HY04_08060 HY04_13995 HY04_13995 aspC_1 aspC_1 HY04_11930 HY04_11930 hpd hpd HY04_09965 HY04_09965 aspC_2 aspC_2 paaB paaB paaC paaC hmp_1 hmp_1 yxeP yxeP fadB2 fadB2 hisC hisC puo puo HY04_04505 HY04_04505 HY04_04630 HY04_04630 HY04_06055 HY04_06055 mhpC_1 mhpC_1 HY04_06610 HY04_06610 paaA paaA hmp_2 hmp_2 boxD boxD paaI paaI echA8_2 echA8_2 paaH paaH
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
HY04_08060phenylacetate-CoA oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (158 aa)
HY04_13995Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (399 aa)
aspC_1Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (417 aa)
HY04_11930Acyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (344 aa)
hpd4-hydroxyphenylpyruvate dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (376 aa)
HY04_09965Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (458 aa)
aspC_2Aspartate aminotransferase; Catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology. (401 aa)
paaBphenylacetate-CoA oxygenase; With PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation; Derived by automated computational analysis using gene prediction method: Protein Homology. (93 aa)
paaCphenylacetate-CoA oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (249 aa)
hmp_1Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (374 aa)
yxePAmidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (378 aa)
fadB23-hydroxybutyryl-CoA dehydrogenase; Converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology. (297 aa)
hisCHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (341 aa)
puoAmine oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (348 aa)
HY04_04505Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (499 aa)
HY04_04630Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (109 aa)
HY04_06055Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (504 aa)
mhpC_1Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa)
HY04_06610FeS assembly SUF system protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (108 aa)
paaAATPase AAA; With PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology. (314 aa)
hmp_2phenylacetate-CoA oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (362 aa)
boxDPhenylacetic acid degradation protein PaaN; Derived by automated computational analysis using gene prediction method: Protein Homology. (832 aa)
paaIThioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa)
echA8_2enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family. (265 aa)
paaH3-hydroxybutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (377 aa)
Your Current Organism:
Chryseobacterium antarcticum
NCBI taxonomy Id: 266748
Other names: C. antarcticum, Chryseobacterium antarcticum (Yi et al. 2005) Kampfer et al. 2009 emend. Hahnke et al. 2016, Chryseobacterium sp. AT1013, DSM 17047, IMSNU 14040, JCM 12381, KCTC 12225, NCTC 13489, Sejongia antarctica, Sejongia antarctica Yi et al. 2005, strain AT1013
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