(14 nodes) RNA recognition motif network (Chondrus crispus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R7Q2D9_CHOCR	Transformer-SR ribonucleoprotein, putative. (348 aa)
	R7Q3L3_CHOCR	RRM domain-containing protein. (553 aa)
	R7Q5L8_CHOCR	Transformer-SR ribonucleoprotein, putative. (348 aa)
	R7Q6L6_CHOCR	HnRNP-like protein, RNA recognition motif (RRM)-containing protein. (382 aa)
	R7Q7G5_CHOCR	TIA1 cytotoxic granule-associated RNA binding protein 1. (392 aa)
	R7QHG3_CHOCR	Putative Heterogeneous nuclear ribonucleoprotein. (521 aa)
	R7QID6_CHOCR	RNP domain-containing protein. (211 aa)
	R7QLC4_CHOCR	RRM domain-containing protein. (1119 aa)
	R7QP11_CHOCR	RNA splicing factor (Pad-1), putative. (649 aa)
	R7QQ59_CHOCR	RRM domain-containing protein. (292 aa)
	R7QRX6_CHOCR	RNA binding protein-like protein, putative. (146 aa)
	R7QV64_CHOCR	Protein kinase domain-containing protein. (635 aa)
	S0F325_CHOCR	Uncharacterized protein. (653 aa)
	S0F379_CHOCR	Arginine/serine-rich splicing factor, putative. (641 aa)

Your Current Organism:

Chondrus crispus

NCBI taxonomy Id: 2769
Other names: C. crispus, Irish moss, carageen, carrageen, carragheen

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R7Q2D9_CHOCR	R7Q3L3_CHOCR	R7Q2D9	R7Q3L3	Transformer-SR ribonucleoprotein, putative.	RRM domain-containing protein.	0.504
R7Q2D9_CHOCR	R7Q5L8_CHOCR	R7Q2D9	R7Q5L8	Transformer-SR ribonucleoprotein, putative.	Transformer-SR ribonucleoprotein, putative.	0.900
R7Q2D9_CHOCR	R7Q6L6_CHOCR	R7Q2D9	R7Q6L6	Transformer-SR ribonucleoprotein, putative.	HnRNP-like protein, RNA recognition motif (RRM)-containing protein.	0.613
R7Q2D9_CHOCR	R7Q7G5_CHOCR	R7Q2D9	R7Q7G5	Transformer-SR ribonucleoprotein, putative.	TIA1 cytotoxic granule-associated RNA binding protein 1.	0.512
R7Q2D9_CHOCR	R7QHG3_CHOCR	R7Q2D9	R7QHG3	Transformer-SR ribonucleoprotein, putative.	Putative Heterogeneous nuclear ribonucleoprotein.	0.521
R7Q2D9_CHOCR	R7QID6_CHOCR	R7Q2D9	R7QID6	Transformer-SR ribonucleoprotein, putative.	RNP domain-containing protein.	0.499
R7Q2D9_CHOCR	R7QP11_CHOCR	R7Q2D9	R7QP11	Transformer-SR ribonucleoprotein, putative.	RNA splicing factor (Pad-1), putative.	0.563
R7Q2D9_CHOCR	R7QQ59_CHOCR	R7Q2D9	R7QQ59	Transformer-SR ribonucleoprotein, putative.	RRM domain-containing protein.	0.523
R7Q2D9_CHOCR	R7QRX6_CHOCR	R7Q2D9	R7QRX6	Transformer-SR ribonucleoprotein, putative.	RNA binding protein-like protein, putative.	0.530
R7Q2D9_CHOCR	S0F379_CHOCR	R7Q2D9	S0F379	Transformer-SR ribonucleoprotein, putative.	Arginine/serine-rich splicing factor, putative.	0.956
R7Q3L3_CHOCR	R7Q2D9_CHOCR	R7Q3L3	R7Q2D9	RRM domain-containing protein.	Transformer-SR ribonucleoprotein, putative.	0.504
R7Q3L3_CHOCR	R7Q5L8_CHOCR	R7Q3L3	R7Q5L8	RRM domain-containing protein.	Transformer-SR ribonucleoprotein, putative.	0.503
R7Q3L3_CHOCR	R7Q6L6_CHOCR	R7Q3L3	R7Q6L6	RRM domain-containing protein.	HnRNP-like protein, RNA recognition motif (RRM)-containing protein.	0.637
R7Q3L3_CHOCR	R7Q7G5_CHOCR	R7Q3L3	R7Q7G5	RRM domain-containing protein.	TIA1 cytotoxic granule-associated RNA binding protein 1.	0.686
R7Q3L3_CHOCR	R7QID6_CHOCR	R7Q3L3	R7QID6	RRM domain-containing protein.	RNP domain-containing protein.	0.484
R7Q3L3_CHOCR	R7QQ59_CHOCR	R7Q3L3	R7QQ59	RRM domain-containing protein.	RRM domain-containing protein.	0.527
R7Q3L3_CHOCR	R7QRX6_CHOCR	R7Q3L3	R7QRX6	RRM domain-containing protein.	RNA binding protein-like protein, putative.	0.532
R7Q3L3_CHOCR	S0F379_CHOCR	R7Q3L3	S0F379	RRM domain-containing protein.	Arginine/serine-rich splicing factor, putative.	0.587
R7Q5L8_CHOCR	R7Q2D9_CHOCR	R7Q5L8	R7Q2D9	Transformer-SR ribonucleoprotein, putative.	Transformer-SR ribonucleoprotein, putative.	0.900
R7Q5L8_CHOCR	R7Q3L3_CHOCR	R7Q5L8	R7Q3L3	Transformer-SR ribonucleoprotein, putative.	RRM domain-containing protein.	0.503