STRINGSTRING
livG-2 livG-2 livM-2 livM-2 livM-6 livM-6 urtC urtC livG-6 livG-6 livM livM livM-5 livM-5 livM-4 livM-4 livM-3 livM-3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
livG-2Branched-chain amino acid transport ATP-binding protein LivG; Belongs to the binding-protein-dependent transport system permease family. (657 aa)
livM-2Branched-chain amino acid transport system permease protein LivM; Belongs to the binding-protein-dependent transport system permease family. (354 aa)
livM-6Branched-chain amino acid transport system permease protein LivM; Belongs to the binding-protein-dependent transport system permease family. (327 aa)
urtCUrea ABC transporter; Permease protein UrtC; Belongs to the binding-protein-dependent transport system permease family. (383 aa)
livG-6Branched-chain amino acid transport ATP-binding protein LivG; Belongs to the binding-protein-dependent transport system permease family. (600 aa)
livMBranched-chain amino acid transport system permease protein LivM; Belongs to the binding-protein-dependent transport system permease family. (302 aa)
livM-5Branched-chain amino acid transport system permease protein LivM; Belongs to the binding-protein-dependent transport system permease family. (319 aa)
livM-4Branched-chain amino acid transport system permease protein LivM; Belongs to the binding-protein-dependent transport system permease family. (404 aa)
livM-3Branched-chain amino acid transport system permease protein LivM; Belongs to the binding-protein-dependent transport system permease family. (316 aa)
Your Current Organism:
Collimonas arenae
NCBI taxonomy Id: 279058
Other names: C. arenae, CCUG 54727, Collimonas arenae Hoppener-Ogawa et al. 2008, Collimonas group A, Collimonas sp. CTO 282, Collimonas sp. NCCB 100025, Collimonas sp. NCCB 100026, Collimonas sp. NCCB 100031, Collimonas sp. Ter10, Collimonas sp. Ter146, Collimonas sp. Ter252, Collimonas sp. Ter282, LMG 23964, LMG:23964, NCCB 100031, strain Ter10
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