STRINGSTRING
LT85_4625 LT85_4625 LT85_0217 LT85_0217 LT85_0218 LT85_0218 xylH xylH rbsC rbsC xylH-2 xylH-2 livM livM livH livH urtC urtC urtB urtB livH-2 livH-2 livM-2 livM-2 ytfT ytfT ytfF ytfF LT85_2688 LT85_2688 livG-2 livG-2 livH-3 livH-3 livH-4 livH-4 livM-3 livM-3 LT85_3192 LT85_3192 LT85_3458 LT85_3458 livM-4 livM-4 livH-5 livH-5 livM-5 livM-5 livH-6 livH-6 livG-6 livG-6 rbsC-2 rbsC-2 livM-6 livM-6 livH-7 livH-7
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LT85_4625High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family. (353 aa)
LT85_0217Nucleoside ABC transporter; Permease protein 1; Belongs to the binding-protein-dependent transport system permease family. (362 aa)
LT85_0218Putative deoxyribose-specific ABC transporter; Permease protein; Belongs to the binding-protein-dependent transport system permease family. (306 aa)
xylHXylose ABC transporter; Permease protein XylH; Belongs to the binding-protein-dependent transport system permease family. (379 aa)
rbsCRibose ABC transport system; Permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family. (344 aa)
xylH-2Xylose ABC transporter; Permease protein XylH; Belongs to the binding-protein-dependent transport system permease family. (328 aa)
livMBranched-chain amino acid transport system permease protein LivM; Belongs to the binding-protein-dependent transport system permease family. (302 aa)
livHHigh-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family. (293 aa)
urtCUrea ABC transporter; Permease protein UrtC; Belongs to the binding-protein-dependent transport system permease family. (383 aa)
urtBUrea ABC transporter; Permease protein UrtB; Belongs to the binding-protein-dependent transport system permease family. (520 aa)
livH-2High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family. (314 aa)
livM-2Branched-chain amino acid transport system permease protein LivM; Belongs to the binding-protein-dependent transport system permease family. (354 aa)
ytfTPutative sugar ABC transport system; Permease protein YtfT; Belongs to the binding-protein-dependent transport system permease family. (384 aa)
ytfFPutative sugar ABC transport system; Permease protein YjfF; Belongs to the binding-protein-dependent transport system permease family. (335 aa)
LT85_2688Inositol transport system permease protein. (386 aa)
livG-2Branched-chain amino acid transport ATP-binding protein LivG; Belongs to the binding-protein-dependent transport system permease family. (657 aa)
livH-3High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family. (296 aa)
livH-4High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family. (289 aa)
livM-3Branched-chain amino acid transport system permease protein LivM; Belongs to the binding-protein-dependent transport system permease family. (316 aa)
LT85_3192ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. (317 aa)
LT85_3458L-arabinose transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. (405 aa)
livM-4Branched-chain amino acid transport system permease protein LivM; Belongs to the binding-protein-dependent transport system permease family. (404 aa)
livH-5High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family. (309 aa)
livM-5Branched-chain amino acid transport system permease protein LivM; Belongs to the binding-protein-dependent transport system permease family. (319 aa)
livH-6High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family. (290 aa)
livG-6Branched-chain amino acid transport ATP-binding protein LivG; Belongs to the binding-protein-dependent transport system permease family. (600 aa)
rbsC-2Ribose ABC transport system; Permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family. (312 aa)
livM-6Branched-chain amino acid transport system permease protein LivM; Belongs to the binding-protein-dependent transport system permease family. (327 aa)
livH-7High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family. (294 aa)
Your Current Organism:
Collimonas arenae
NCBI taxonomy Id: 279058
Other names: C. arenae, CCUG 54727, Collimonas arenae Hoppener-Ogawa et al. 2008, Collimonas group A, Collimonas sp. CTO 282, Collimonas sp. NCCB 100025, Collimonas sp. NCCB 100026, Collimonas sp. NCCB 100031, Collimonas sp. Ter10, Collimonas sp. Ter146, Collimonas sp. Ter252, Collimonas sp. Ter282, LMG 23964, LMG:23964, NCCB 100031, strain Ter10
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