(67 nodes) Mixed, incl. Cis-regulatory region sequence-specific DNA binding, and Zinc finger, GATA-type network (Yarrowia lipolytica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	YALI0_F03630g	YALI0F03630p. (643 aa)
	YALI0_C05665g	YALI0C05665p; Belongs to the 14-3-3 family. (256 aa)
	YALI0_B14377g	YALI0B14377p; Belongs to the 14-3-3 family. (276 aa)
	YALI0_A14542g	YALI0A14542p. (647 aa)
	YALI0_F24585g	YALI0F24585p. (687 aa)
	YALI0_F23859g	YALI0F23859p. (227 aa)
	AIM11	Altered inheritance of mitochondria protein 11. (158 aa)
	YALI0_F21923g	YALI0F21923p. (214 aa)
	YALI0_F18920g	YALI0F18920p. (494 aa)
	YALI0_F18458g	YALI0F18458p. (400 aa)
	YALI0_F17886g	YALI0F17886p. (697 aa)
	YALI0_F15543g	YALI0F15543p. (519 aa)
	YALI0_F15169g	YALI0F15169p. (801 aa)
	YALI0_F14267g	YALI0F14267p. (375 aa)
	YALI0_F12287g	YALI0F12287p. (441 aa)
	YALI0_F11011g	YALI0F11011p. (426 aa)
	YALI0_F03157g	YALI0F03157p. (369 aa)
	YALI0_F02079g	YALI0F02079p. (704 aa)
	YALI0_F01562g	YALI0F01562p. (977 aa)
	YALI0_F01540g	YALI0F01540p. (389 aa)
	YALI0_F00242g	YALI0F00242p. (210 aa)
	YALI0_F00132g	YALI0F00132p. (432 aa)
	YALI0_E32219g	YALI0E32219p. (282 aa)
	YALI0_E31757g	YALI0E31757p. (406 aa)
	YALI0_E30789g	YALI0E30789p. (934 aa)
	YALI0_E30547g	YALI0E30547p. (1257 aa)
	YALI0_E27742g	YALI0E27742p. (281 aa)
	HOG1	Mitogen-activated protein kinase HOG1; Mitogen-activated protein kinase involved in a signal transduction pathway that is activated by changes in the osmolarity of the extracellular environment. Controls osmotic regulation of transcription of target genes (By similarity); Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. HOG1 sub-subfamily. (386 aa)
	YALI0_E23518g	YALI0E23518p. (301 aa)
	YALI0_E21087g	YALI0E21087p. (281 aa)
	YALI0_E20449g	YALI0E20449p. (487 aa)
	YALI0_E19162g	YALI0E19162p. (400 aa)
	YALI0_E16973g	YALI0E16973p. (389 aa)
	YALI0_E16577g	YALI0E16577p. (348 aa)
	YALI0_E16236g	YALI0E16236p. (665 aa)
	YALI0_E05555g	YALI0E05555p. (805 aa)
	YALI0_E01430g	YALI0E01430p. (738 aa)
	YALI0_D24167g	YALI0D24167p. (320 aa)
	YALI0_D21230g	YALI0D21230p. (478 aa)
	YALI0_D20482g	YALI0D20482p. (238 aa)
	YALI0_D14872g	YALI0D14872p. (656 aa)
	YALI0_D09647g	YALI0D09647p. (800 aa)
	YALI0_D02255g	YALI0D02255p. (628 aa)
	YALI0_D01573g	YALI0D01573p. (590 aa)
	YALI0_C22682g	YALI0C22682p. (634 aa)
	YALI0_C20977g	YALI0C20977p. (384 aa)
	YALI0_C19151g	YALI0C19151p. (927 aa)
	YALI0_C16863g	YALI0C16863p. (579 aa)
	YALI0_C13750g	YALI0C13750p. (399 aa)
	YALI0_C12364g	YALI0C12364p. (275 aa)
	YALI0_C11033g	YALI0C11033p. (480 aa)
	YALI0_C10010g	YALI0C10010p. (529 aa)
	YALI0_C09185g	YALI0C09185p. (764 aa)
	YALI0_C06842g	YALI0C06842p. (251 aa)
	YALI0_C05995g	YALI0C05995p. (962 aa)
	YALI0_C01463g	YALI0C01463p. (872 aa)
	YALI0_B22176g	YALI0B22176p. (590 aa)
	YALI0_B19602g	YALI0B19602p. (403 aa)
	YALI0_B19030g	YALI0B19030p. (308 aa)
	YALI0_B15246g	YALI0B15246p. (1013 aa)
	YALI0_B07579g	YALI0B07579p. (885 aa)
	YALI0_B02266g	YALI0B02266p. (916 aa)
	YALI0_B00660g	YALI0B00660p. (341 aa)
	YALI0_A10637g	YALI0A10637p. (840 aa)
	YALI0_A06974g	YALI0A06974p. (372 aa)
	HOY1	Homeobox protein HOY1. (509 aa)
	YALI0_E18161g	YALI0E18161p. (323 aa)

Your Current Organism:

Yarrowia lipolytica

NCBI taxonomy Id: 284591
Other names: Y. lipolytica CLIB122, Yarrowia lipolytica CLIB122

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HOG1	YALI0_A14542g	Q6C4M9	F2Z6H7	Mitogen-activated protein kinase HOG1; Mitogen-activated protein kinase involved in a signal transduction pathway that is activated by changes in the osmolarity of the extracellular environment. Controls osmotic regulation of transcription of target genes (By similarity); Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. HOG1 sub-subfamily.	YALI0A14542p.	0.411
HOG1	YALI0_B07579g	Q6C4M9	Q6CFF2	Mitogen-activated protein kinase HOG1; Mitogen-activated protein kinase involved in a signal transduction pathway that is activated by changes in the osmolarity of the extracellular environment. Controls osmotic regulation of transcription of target genes (By similarity); Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. HOG1 sub-subfamily.	YALI0B07579p.	0.493
HOG1	YALI0_B14377g	Q6C4M9	F2Z6F8	Mitogen-activated protein kinase HOG1; Mitogen-activated protein kinase involved in a signal transduction pathway that is activated by changes in the osmolarity of the extracellular environment. Controls osmotic regulation of transcription of target genes (By similarity); Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. HOG1 sub-subfamily.	YALI0B14377p; Belongs to the 14-3-3 family.	0.431
HOG1	YALI0_C05665g	Q6C4M9	F2Z5Y1	Mitogen-activated protein kinase HOG1; Mitogen-activated protein kinase involved in a signal transduction pathway that is activated by changes in the osmolarity of the extracellular environment. Controls osmotic regulation of transcription of target genes (By similarity); Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. HOG1 sub-subfamily.	YALI0C05665p; Belongs to the 14-3-3 family.	0.438
HOG1	YALI0_C11033g	Q6C4M9	Q6CCA7	Mitogen-activated protein kinase HOG1; Mitogen-activated protein kinase involved in a signal transduction pathway that is activated by changes in the osmolarity of the extracellular environment. Controls osmotic regulation of transcription of target genes (By similarity); Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. HOG1 sub-subfamily.	YALI0C11033p.	0.440
HOG1	YALI0_C16863g	Q6C4M9	Q6CBP0	Mitogen-activated protein kinase HOG1; Mitogen-activated protein kinase involved in a signal transduction pathway that is activated by changes in the osmolarity of the extracellular environment. Controls osmotic regulation of transcription of target genes (By similarity); Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. HOG1 sub-subfamily.	YALI0C16863p.	0.996
HOG1	YALI0_E16236g	Q6C4M9	Q6C5Q0	Mitogen-activated protein kinase HOG1; Mitogen-activated protein kinase involved in a signal transduction pathway that is activated by changes in the osmolarity of the extracellular environment. Controls osmotic regulation of transcription of target genes (By similarity); Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. HOG1 sub-subfamily.	YALI0E16236p.	0.572
HOG1	YALI0_E27742g	Q6C4M9	Q6C4D2	Mitogen-activated protein kinase HOG1; Mitogen-activated protein kinase involved in a signal transduction pathway that is activated by changes in the osmolarity of the extracellular environment. Controls osmotic regulation of transcription of target genes (By similarity); Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. HOG1 sub-subfamily.	YALI0E27742p.	0.452
HOG1	YALI0_F15169g	Q6C4M9	Q6C1L6	Mitogen-activated protein kinase HOG1; Mitogen-activated protein kinase involved in a signal transduction pathway that is activated by changes in the osmolarity of the extracellular environment. Controls osmotic regulation of transcription of target genes (By similarity); Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. HOG1 sub-subfamily.	YALI0F15169p.	0.473
HOG1	YALI0_F18920g	Q6C4M9	Q6C162	Mitogen-activated protein kinase HOG1; Mitogen-activated protein kinase involved in a signal transduction pathway that is activated by changes in the osmolarity of the extracellular environment. Controls osmotic regulation of transcription of target genes (By similarity); Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. HOG1 sub-subfamily.	YALI0F18920p.	0.483
HOG1	YALI0_F24585g	Q6C4M9	Q6C0H6	Mitogen-activated protein kinase HOG1; Mitogen-activated protein kinase involved in a signal transduction pathway that is activated by changes in the osmolarity of the extracellular environment. Controls osmotic regulation of transcription of target genes (By similarity); Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. HOG1 sub-subfamily.	YALI0F24585p.	0.906
HOY1	YALI0_C19151g	Q99160	Q6CBG1	Homeobox protein HOY1.	YALI0C19151p.	0.753
HOY1	YALI0_C20977g	Q99160	Q6CB93	Homeobox protein HOY1.	YALI0C20977p.	0.756
HOY1	YALI0_D14872g	Q99160	Q6C925	Homeobox protein HOY1.	YALI0D14872p.	0.758
HOY1	YALI0_E18161g	Q99160	W0TYM3	Homeobox protein HOY1.	YALI0E18161p.	0.769
HOY1	YALI0_E30789g	Q99160	Q6C407	Homeobox protein HOY1.	YALI0E30789p.	0.470
HOY1	YALI0_F01562g	Q99160	Q6C396	Homeobox protein HOY1.	YALI0F01562p.	0.718
HOY1	YALI0_F15543g	Q99160	Q6C1K3	Homeobox protein HOY1.	YALI0F15543p.	0.775
HOY1	YALI0_F21923g	Q99160	Q6C0T4	Homeobox protein HOY1.	YALI0F21923p.	0.773
YALI0_A06974g	YALI0_C22682g	Q6CHN2	Q6CB14	YALI0A06974p.	YALI0C22682p.	0.630