(5 nodes) Protein export from nucleus, and Ran binding protein RanBP1-like network (Yarrowia lipolytica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	YALI0_F10098g	YALI0F10098p. (1080 aa)
	YALI0_B15081g	YALI0B15081p. (269 aa)
	YALI0_B12210g	YALI0B12210p. (386 aa)
	YALI0_A02134g	YALI0A02134p. (1366 aa)
	GSP1	GTP-binding nuclear protein GSP1/Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (By similarity). (214 aa)

Your Current Organism:

Yarrowia lipolytica

NCBI taxonomy Id: 284591
Other names: Y. lipolytica CLIB122, Yarrowia lipolytica CLIB122

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GSP1	YALI0_A02134g	Q8TFK3	Q6CI34	GTP-binding nuclear protein GSP1/Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (By similarity).	YALI0A02134p.	0.999
GSP1	YALI0_B12210g	Q8TFK3	Q6CEX2	GTP-binding nuclear protein GSP1/Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (By similarity).	YALI0B12210p.	0.998
GSP1	YALI0_B15081g	Q8TFK3	Q6CEJ9	GTP-binding nuclear protein GSP1/Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (By similarity).	YALI0B15081p.	0.997
GSP1	YALI0_F10098g	Q8TFK3	Q6C278	GTP-binding nuclear protein GSP1/Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (By similarity).	YALI0F10098p.	0.999
YALI0_A02134g	GSP1	Q6CI34	Q8TFK3	YALI0A02134p.	GTP-binding nuclear protein GSP1/Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (By similarity).	0.999
YALI0_A02134g	YALI0_B12210g	Q6CI34	Q6CEX2	YALI0A02134p.	YALI0B12210p.	0.987
YALI0_A02134g	YALI0_B15081g	Q6CI34	Q6CEJ9	YALI0A02134p.	YALI0B15081p.	0.999
YALI0_A02134g	YALI0_F10098g	Q6CI34	Q6C278	YALI0A02134p.	YALI0F10098p.	0.447
YALI0_B12210g	GSP1	Q6CEX2	Q8TFK3	YALI0B12210p.	GTP-binding nuclear protein GSP1/Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (By similarity).	0.998
YALI0_B12210g	YALI0_A02134g	Q6CEX2	Q6CI34	YALI0B12210p.	YALI0A02134p.	0.987
YALI0_B12210g	YALI0_B15081g	Q6CEX2	Q6CEJ9	YALI0B12210p.	YALI0B15081p.	0.996
YALI0_B12210g	YALI0_F10098g	Q6CEX2	Q6C278	YALI0B12210p.	YALI0F10098p.	0.887
YALI0_B15081g	GSP1	Q6CEJ9	Q8TFK3	YALI0B15081p.	GTP-binding nuclear protein GSP1/Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (By similarity).	0.997
YALI0_B15081g	YALI0_A02134g	Q6CEJ9	Q6CI34	YALI0B15081p.	YALI0A02134p.	0.999
YALI0_B15081g	YALI0_B12210g	Q6CEJ9	Q6CEX2	YALI0B15081p.	YALI0B12210p.	0.996
YALI0_B15081g	YALI0_F10098g	Q6CEJ9	Q6C278	YALI0B15081p.	YALI0F10098p.	0.978
YALI0_F10098g	GSP1	Q6C278	Q8TFK3	YALI0F10098p.	GTP-binding nuclear protein GSP1/Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (By similarity).	0.999
YALI0_F10098g	YALI0_A02134g	Q6C278	Q6CI34	YALI0F10098p.	YALI0A02134p.	0.447
YALI0_F10098g	YALI0_B12210g	Q6C278	Q6CEX2	YALI0F10098p.	YALI0B12210p.	0.887
YALI0_F10098g	YALI0_B15081g	Q6C278	Q6CEJ9	YALI0F10098p.	YALI0B15081p.	0.978