(5 nodes) Mixed, incl. Ribosomal protein L23, and Ribosomal protein L13 network (Schizosaccharomyces pombe)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	mrpl28	54S ribosomal protein L28, mitochondrial; Involved in mitochondrial genome encoded proteins translation. (118 aa)
	mrpl33	Probable 54S ribosomal protein L33, mitochondrial. (97 aa)
	mrpl23	54S ribosomal protein L23, mitochondrial; Belongs to the universal ribosomal protein uL13 family. (157 aa)
	mrp20	54S ribosomal protein L23, mitochondrial; Involved in mitochondrial genome encoded proteins translation. (161 aa)
	mrx14	Probable 54S ribosomal protein L34, mitochondrial. (108 aa)

Your Current Organism:

Schizosaccharomyces pombe

NCBI taxonomy Id: 284812
Other names: S. pombe 972h-, Schizosaccharomyces pombe 972h-

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
mrp20	mrpl23	Q09727	O60118	54S ribosomal protein L23, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	54S ribosomal protein L23, mitochondrial; Belongs to the universal ribosomal protein uL13 family.	0.994
mrp20	mrpl28	Q09727	O14181	54S ribosomal protein L23, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	54S ribosomal protein L28, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	0.979
mrp20	mrpl33	Q09727	O59856	54S ribosomal protein L23, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	Probable 54S ribosomal protein L33, mitochondrial.	0.989
mrp20	mrx14	Q09727	Q9P7L9	54S ribosomal protein L23, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	Probable 54S ribosomal protein L34, mitochondrial.	0.983
mrpl23	mrp20	O60118	Q09727	54S ribosomal protein L23, mitochondrial; Belongs to the universal ribosomal protein uL13 family.	54S ribosomal protein L23, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	0.994
mrpl23	mrpl28	O60118	O14181	54S ribosomal protein L23, mitochondrial; Belongs to the universal ribosomal protein uL13 family.	54S ribosomal protein L28, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	0.998
mrpl23	mrpl33	O60118	O59856	54S ribosomal protein L23, mitochondrial; Belongs to the universal ribosomal protein uL13 family.	Probable 54S ribosomal protein L33, mitochondrial.	0.983
mrpl23	mrx14	O60118	Q9P7L9	54S ribosomal protein L23, mitochondrial; Belongs to the universal ribosomal protein uL13 family.	Probable 54S ribosomal protein L34, mitochondrial.	0.992
mrpl28	mrp20	O14181	Q09727	54S ribosomal protein L28, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	54S ribosomal protein L23, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	0.979
mrpl28	mrpl23	O14181	O60118	54S ribosomal protein L28, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	54S ribosomal protein L23, mitochondrial; Belongs to the universal ribosomal protein uL13 family.	0.998
mrpl28	mrpl33	O14181	O59856	54S ribosomal protein L28, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	Probable 54S ribosomal protein L33, mitochondrial.	0.982
mrpl28	mrx14	O14181	Q9P7L9	54S ribosomal protein L28, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	Probable 54S ribosomal protein L34, mitochondrial.	0.966
mrpl33	mrp20	O59856	Q09727	Probable 54S ribosomal protein L33, mitochondrial.	54S ribosomal protein L23, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	0.989
mrpl33	mrpl23	O59856	O60118	Probable 54S ribosomal protein L33, mitochondrial.	54S ribosomal protein L23, mitochondrial; Belongs to the universal ribosomal protein uL13 family.	0.983
mrpl33	mrpl28	O59856	O14181	Probable 54S ribosomal protein L33, mitochondrial.	54S ribosomal protein L28, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	0.982
mrpl33	mrx14	O59856	Q9P7L9	Probable 54S ribosomal protein L33, mitochondrial.	Probable 54S ribosomal protein L34, mitochondrial.	0.984
mrx14	mrp20	Q9P7L9	Q09727	Probable 54S ribosomal protein L34, mitochondrial.	54S ribosomal protein L23, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	0.983
mrx14	mrpl23	Q9P7L9	O60118	Probable 54S ribosomal protein L34, mitochondrial.	54S ribosomal protein L23, mitochondrial; Belongs to the universal ribosomal protein uL13 family.	0.992
mrx14	mrpl28	Q9P7L9	O14181	Probable 54S ribosomal protein L34, mitochondrial.	54S ribosomal protein L28, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	0.966
mrx14	mrpl33	Q9P7L9	O59856	Probable 54S ribosomal protein L34, mitochondrial.	Probable 54S ribosomal protein L33, mitochondrial.	0.984