(38 nodes) Ribosome biogenesis network (Streptomyces luteocolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_001748305_00060	Unannotated protein. (161 aa)
	GCA_001748305_01126	Unannotated protein. (518 aa)
	GCA_001748305_01379	Unannotated protein. (239 aa)
	GCA_001748305_02244	Unannotated protein. (134 aa)
	GCA_001748305_02265	Unannotated protein. (115 aa)
	GCA_001748305_02266	Unannotated protein. (93 aa)
	GCA_001748305_02275	Unannotated protein. (156 aa)
	GCA_001748305_03102	Unannotated protein. (457 aa)
	GCA_001748305_03120	Unannotated protein. (272 aa)
	GCA_001748305_03122	Unannotated protein. (228 aa)
	GCA_001748305_03125	Unannotated protein. (197 aa)
	GCA_001748305_03355	Unannotated protein. (482 aa)
	GCA_001748305_03367	Unannotated protein. (147 aa)
	GCA_001748305_03551	Unannotated protein. (635 aa)
	GCA_001748305_04105	Unannotated protein. (453 aa)
	GCA_001748305_04425	Unannotated protein. (563 aa)
	GCA_001748305_04630	Unannotated protein. (336 aa)
	GCA_001748305_05584	Unannotated protein. (561 aa)
	GCA_001748305_05606	Unannotated protein. (149 aa)
	GCA_001748305_05611	Unannotated protein. (165 aa)
	GCA_001748305_05651	Unannotated protein. (128 aa)
	GCA_001748305_05942	Unannotated protein. (319 aa)
	GCA_001748305_06001	Unannotated protein. (1323 aa)
	GCA_001748305_06050	Unannotated protein. (195 aa)
	GCA_001748305_06070	Unannotated protein. (368 aa)
	GCA_001748305_06104	Unannotated protein. (745 aa)
	GCA_001748305_06146	Unannotated protein. (374 aa)
	GCA_001748305_06159	Unannotated protein. (493 aa)
	GCA_001748305_06352	Unannotated protein. (759 aa)
	GCA_001748305_06652	Unannotated protein. (375 aa)
	GCA_001748305_06750	Unannotated protein. (389 aa)
	GCA_001748305_06842	Unannotated protein. (246 aa)
	GCA_001748305_06855	Unannotated protein. (165 aa)
	GCA_001748305_06866	Unannotated protein. (320 aa)
	GCA_001748305_06963	Unannotated protein. (298 aa)
	GCA_001748305_07469	Unannotated protein. (499 aa)
	GCA_001748305_07474	Unannotated protein. (249 aa)
	GCA_001748305_08152	Unannotated protein. (288 aa)

Your Current Organism:

Streptomyces luteocolor

NCBI taxonomy Id: 285500
Other names: S. luteocolor

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_001748305_00060	GCA_001748305_06159	Unannotated protein.	Unannotated protein.	0.538
GCA_001748305_01126	GCA_001748305_03551	Unannotated protein.	Unannotated protein.	0.718
GCA_001748305_01126	GCA_001748305_06146	Unannotated protein.	Unannotated protein.	0.687
GCA_001748305_01379	GCA_001748305_03125	Unannotated protein.	Unannotated protein.	0.501
GCA_001748305_01379	GCA_001748305_03367	Unannotated protein.	Unannotated protein.	0.490
GCA_001748305_01379	GCA_001748305_04630	Unannotated protein.	Unannotated protein.	0.436
GCA_001748305_01379	GCA_001748305_05942	Unannotated protein.	Unannotated protein.	0.450
GCA_001748305_01379	GCA_001748305_06050	Unannotated protein.	Unannotated protein.	0.526
GCA_001748305_01379	GCA_001748305_06159	Unannotated protein.	Unannotated protein.	0.699
GCA_001748305_01379	GCA_001748305_06842	Unannotated protein.	Unannotated protein.	0.429
GCA_001748305_01379	GCA_001748305_06855	Unannotated protein.	Unannotated protein.	0.404
GCA_001748305_01379	GCA_001748305_06866	Unannotated protein.	Unannotated protein.	0.650
GCA_001748305_01379	GCA_001748305_06963	Unannotated protein.	Unannotated protein.	0.631
GCA_001748305_01379	GCA_001748305_08152	Unannotated protein.	Unannotated protein.	0.859
GCA_001748305_02244	GCA_001748305_02265	Unannotated protein.	Unannotated protein.	0.999
GCA_001748305_02244	GCA_001748305_02266	Unannotated protein.	Unannotated protein.	0.999
GCA_001748305_02244	GCA_001748305_02275	Unannotated protein.	Unannotated protein.	0.999
GCA_001748305_02244	GCA_001748305_03120	Unannotated protein.	Unannotated protein.	0.938
GCA_001748305_02244	GCA_001748305_03122	Unannotated protein.	Unannotated protein.	0.840
GCA_001748305_02244	GCA_001748305_03551	Unannotated protein.	Unannotated protein.	0.548