5 items (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	l1cam	L1 cell adhesion molecule, paralog a. (1279 aa)
	LOC107093193	Contactin 4. (1029 aa)
	ncam1	Neural cell adhesion molecule 1b. (1203 aa)
	ENSCVAP00000031791	Uncharacterized protein. (225 aa)
	LOC107090732	Uncharacterized protein. (1208 aa)

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000031791	LOC107090732	ENSCVAP00000031791	ENSCVAP00000032515	Uncharacterized protein.	Uncharacterized protein.	0.937
ENSCVAP00000031791	l1cam	ENSCVAP00000031791	ENSCVAP00000019118	Uncharacterized protein.	L1 cell adhesion molecule, paralog a.	0.937
ENSCVAP00000031791	ncam1	ENSCVAP00000031791	ENSCVAP00000031217	Uncharacterized protein.	Neural cell adhesion molecule 1b.	0.900
LOC107090732	ENSCVAP00000031791	ENSCVAP00000032515	ENSCVAP00000031791	Uncharacterized protein.	Uncharacterized protein.	0.937
LOC107090732	LOC107093193	ENSCVAP00000032515	ENSCVAP00000020685	Uncharacterized protein.	Contactin 4.	0.485
LOC107090732	l1cam	ENSCVAP00000032515	ENSCVAP00000019118	Uncharacterized protein.	L1 cell adhesion molecule, paralog a.	0.903
LOC107090732	ncam1	ENSCVAP00000032515	ENSCVAP00000031217	Uncharacterized protein.	Neural cell adhesion molecule 1b.	0.937
LOC107093193	LOC107090732	ENSCVAP00000020685	ENSCVAP00000032515	Contactin 4.	Uncharacterized protein.	0.485
LOC107093193	l1cam	ENSCVAP00000020685	ENSCVAP00000019118	Contactin 4.	L1 cell adhesion molecule, paralog a.	0.485
l1cam	ENSCVAP00000031791	ENSCVAP00000019118	ENSCVAP00000031791	L1 cell adhesion molecule, paralog a.	Uncharacterized protein.	0.937
l1cam	LOC107090732	ENSCVAP00000019118	ENSCVAP00000032515	L1 cell adhesion molecule, paralog a.	Uncharacterized protein.	0.903
l1cam	LOC107093193	ENSCVAP00000019118	ENSCVAP00000020685	L1 cell adhesion molecule, paralog a.	Contactin 4.	0.485
l1cam	ncam1	ENSCVAP00000019118	ENSCVAP00000031217	L1 cell adhesion molecule, paralog a.	Neural cell adhesion molecule 1b.	0.937
ncam1	ENSCVAP00000031791	ENSCVAP00000031217	ENSCVAP00000031791	Neural cell adhesion molecule 1b.	Uncharacterized protein.	0.900
ncam1	LOC107090732	ENSCVAP00000031217	ENSCVAP00000032515	Neural cell adhesion molecule 1b.	Uncharacterized protein.	0.937
ncam1	l1cam	ENSCVAP00000031217	ENSCVAP00000019118	Neural cell adhesion molecule 1b.	L1 cell adhesion molecule, paralog a.	0.937