STRINGSTRING
CKO_01152 CKO_01152 CKO_02105 CKO_02105 CKO_03175 CKO_03175 CKO_03918 CKO_03918 CKO_04651 CKO_04651
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CKO_01152COG: COG1278 Cold shock proteins; Psort location: Cytoplasmic, score:9.26. (69 aa)
CKO_02105Hypothetical protein; KEGG: eci:UTI89_C1028 0. helD; DNA helicase IV K03658; COG: COG0210 Superfamily I DNA and RNA helicases; Psort location: Cytoplasmic, score:8.96. (684 aa)
CKO_03175Hypothetical protein; KEGG: bpm:BURPS1710b_0319 5.9e-40 YaeQ protein K00356; COG: COG4681 Uncharacterized protein conserved in bacteria. (181 aa)
CKO_03918COG: COG1544 Ribosome-associated protein Y (PSrp-1); Psort location: Cytoplasmic, score:8.96. (126 aa)
CKO_04651Hypothetical protein; KEGG: shn:Shewana3_3435 8.8e-10 transcriptional regulator, LysR family K06022; COG: COG0583 Transcriptional regulator; Psort location: Cytoplasmic, score:9.26; Belongs to the LysR transcriptional regulatory family. (309 aa)
Your Current Organism:
Citrobacter koseri
NCBI taxonomy Id: 290338
Other names: C. koseri ATCC BAA-895, Citrobacter (diversus) koseri ATCC BAA-895, Citrobacter koseri ATCC BAA-895, Citrobacter koseri str. ATCC BAA-895, Citrobacter koseri strain ATCC BAA-895
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