(5 nodes) Chlorophyll binding network (Jannaschia sp. CCS1)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	puhA	Reaction center protein H chain. (260 aa)
	pufM	Reaction center protein M chain; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis. (332 aa)
	pufL	Reaction center protein L chain; Belongs to the reaction center PufL/M/PsbA/D family. (302 aa)
	pufA	Light-harvesting protein B-870 alpha chain; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers. (55 aa)
	pufB	Light-harvesting protein B-800-850 beta chain B; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers. (60 aa)

Your Current Organism:

Jannaschia sp. CCS1

NCBI taxonomy Id: 290400
Other names: J. sp. CCS1

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
pufA	pufB	Jann_0174	Jann_0175	Light-harvesting protein B-870 alpha chain; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	Light-harvesting protein B-800-850 beta chain B; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	0.999
pufA	pufL	Jann_0174	Jann_0173	Light-harvesting protein B-870 alpha chain; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	Reaction center protein L chain; Belongs to the reaction center PufL/M/PsbA/D family.	0.999
pufA	pufM	Jann_0174	Jann_0172	Light-harvesting protein B-870 alpha chain; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	Reaction center protein M chain; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.	0.999
pufA	puhA	Jann_0174	Jann_0155	Light-harvesting protein B-870 alpha chain; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	Reaction center protein H chain.	0.992
pufB	pufA	Jann_0175	Jann_0174	Light-harvesting protein B-800-850 beta chain B; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	Light-harvesting protein B-870 alpha chain; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	0.999
pufB	pufL	Jann_0175	Jann_0173	Light-harvesting protein B-800-850 beta chain B; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	Reaction center protein L chain; Belongs to the reaction center PufL/M/PsbA/D family.	0.999
pufB	pufM	Jann_0175	Jann_0172	Light-harvesting protein B-800-850 beta chain B; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	Reaction center protein M chain; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.	0.999
pufB	puhA	Jann_0175	Jann_0155	Light-harvesting protein B-800-850 beta chain B; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	Reaction center protein H chain.	0.991
pufL	pufA	Jann_0173	Jann_0174	Reaction center protein L chain; Belongs to the reaction center PufL/M/PsbA/D family.	Light-harvesting protein B-870 alpha chain; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	0.999
pufL	pufB	Jann_0173	Jann_0175	Reaction center protein L chain; Belongs to the reaction center PufL/M/PsbA/D family.	Light-harvesting protein B-800-850 beta chain B; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	0.999
pufL	pufM	Jann_0173	Jann_0172	Reaction center protein L chain; Belongs to the reaction center PufL/M/PsbA/D family.	Reaction center protein M chain; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.	0.999
pufL	puhA	Jann_0173	Jann_0155	Reaction center protein L chain; Belongs to the reaction center PufL/M/PsbA/D family.	Reaction center protein H chain.	0.999
pufM	pufA	Jann_0172	Jann_0174	Reaction center protein M chain; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.	Light-harvesting protein B-870 alpha chain; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	0.999
pufM	pufB	Jann_0172	Jann_0175	Reaction center protein M chain; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.	Light-harvesting protein B-800-850 beta chain B; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	0.999
pufM	pufL	Jann_0172	Jann_0173	Reaction center protein M chain; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.	Reaction center protein L chain; Belongs to the reaction center PufL/M/PsbA/D family.	0.999
pufM	puhA	Jann_0172	Jann_0155	Reaction center protein M chain; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.	Reaction center protein H chain.	0.999
puhA	pufA	Jann_0155	Jann_0174	Reaction center protein H chain.	Light-harvesting protein B-870 alpha chain; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	0.992
puhA	pufB	Jann_0155	Jann_0175	Reaction center protein H chain.	Light-harvesting protein B-800-850 beta chain B; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.	0.991
puhA	pufL	Jann_0155	Jann_0173	Reaction center protein H chain.	Reaction center protein L chain; Belongs to the reaction center PufL/M/PsbA/D family.	0.999
puhA	pufM	Jann_0155	Jann_0172	Reaction center protein H chain.	Reaction center protein M chain; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.	0.999