STRINGSTRING
BF0182 BF0182 asd asd BF0576 BF0576 BF0607 BF0607 BF0608 BF0608 BF0610 BF0610 dapA dapA BF2639 BF2639 dapF dapF dapL dapL BF2658 BF2658 lysA lysA BF3050 BF3050 asnA asnA BF3943 BF3943 BF4213 BF4213 BF4215 BF4215
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BF0182Dihydrodipicolinate reductase; Similar to gp:AE016940_21 [Bacteroides thetaiotaomicron VPI-5482], percent identity 83 in 254 aa, BLASTP E(): e-119; Belongs to the DapB family. (242 aa)
asdAspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. (336 aa)
BF0576Aspartokinase; Similar to gp:AE016931_166 [Bacteroides thetaiotaomicron VPI-5482], percent identity 42 in 436 aa, BLASTP E(): 9e-96. (454 aa)
BF0607Similar to gp:AE016935_251 [Bacteroides thetaiotaomicron VPI-5482], percent identity 81 in 327 aa, BLASTP E(): e-155. (349 aa)
BF0608Aspartokinase/homoserine dehydrogenase; Similar to gp:AE016935_250 [Bacteroides thetaiotaomicron VPI-5482], percent identity 90 in 811 aa, BLASTP E(): 0.0. (811 aa)
BF0610Threonine synthase; Similar to gp:AE016935_248 [Bacteroides thetaiotaomicron VPI-5482], percent identity 88 in 431 aa, BLASTP E(): 0.0. (433 aa)
dapADihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). (297 aa)
BF2639Similar to gp:AE016928_64 [glutamine-hydrolyzing], percent identity 85 in 558 aa, BLASTP E(): 0.0. (558 aa)
dapFDiaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. (269 aa)
dapLAspartate aminotransferase; Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL- diaminopimelate. (410 aa)
BF2658Similar to gp:AE016928_39 [Bacteroides thetaiotaomicron VPI-5482], percent identity 93 in 345 aa, BLASTP E(): 0.0. (348 aa)
lysADiaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. (387 aa)
BF3050Aspartokinase; Similar to gp:AE016931_166 [Bacteroides thetaiotaomicron VPI-5482], percent identity 95 in 439 aa, BLASTP E(): 0.0; Belongs to the aspartokinase family. (439 aa)
asnAAspartate-ammonia ligase; Similar to gp:AE016934_210 [Bacteroides thetaiotaomicron VPI-5482], percent identity 92 in 345 aa, BLASTP E(): 0.0. (345 aa)
BF3943Aminotransferase; Similar to gp:AE016942_208 [Bacteroides thetaiotaomicron VPI-5482], percent identity 91 in 390 aa, BLASTP E(): 0.0. (394 aa)
BF4213Aspartate ammonia-lyase; Similar to gp:AE016937_95 [Bacteroides thetaiotaomicron VPI-5482], percent identity 91 in 477 aa, BLASTP E(): 0.0. (477 aa)
BF4215L-asparaginase II precursor; Similar to gp:AE016937_97 [Bacteroides thetaiotaomicron VPI-5482], percent identity 84 in 352 aa, BLASTP E(): e-169. (352 aa)
Your Current Organism:
Bacteroides fragilis
NCBI taxonomy Id: 295405
Other names: B. fragilis YCH46, Bacteroides fragilis YCH46, Bacteroides fragilis str. YCH46, Bacteroides fragilis strain YCH46
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