(38 nodes) (2019) Metabolic engineering of microbial cell factories for production of nutraceuticals. network (Vitis vinifera)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	gdhA	Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (411 aa)
	F3H	Flavanone 3-hydroxylase; Belongs to the iron/ascorbate-dependent oxidoreductase family. (363 aa)
	VITISV_008139	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family. (133 aa)
	VITISV_028490	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family. (147 aa)
	PAL1	Phenylalanine ammonia-lyase. (717 aa)
	LAR2	NmrA domain-containing protein. (358 aa)
	CHI	Chalcone-flavonone isomerase family protein; Belongs to the chalcone isomerase family. (234 aa)
	D7T9Y7_VITVI	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family. (134 aa)
	D7TCJ8_VITVI	Phenylalanine ammonia-lyase. (665 aa)
	BCH1	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family. (299 aa)
	D7U5I9_VITVI	Uncharacterized protein. (413 aa)
	GPPS	Uncharacterized protein; Belongs to the FPP/GGPP synthase family. (422 aa)
	E0CV99_VITVI	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family. (134 aa)
	DFR	Epimerase domain-containing protein. (375 aa)
	F6HEB0_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	F6HEB1_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	F6HEB2_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	F6HEB3_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	PAL	Phenylalanine ammonia-lyase. (710 aa)
	F6HEB8_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	PAL-2	Phenylalanine ammonia-lyase. (710 aa)
	PAL-3	Phenylalanine ammonia-lyase. (734 aa)
	F6HEC2_VITVI	Phenylalanine ammonia-lyase. (710 aa)
	4CL	Uncharacterized protein. (548 aa)
	F6HGU6_VITVI	Phenylalanine ammonia-lyase. (895 aa)
	PAL7	Phenylalanine ammonia-lyase. (723 aa)
	STS	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family. (392 aa)
	RS	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family. (392 aa)
	F6HP39_VITVI	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family. (392 aa)
	PAL2	Phenylalanine ammonia-lyase. (710 aa)
	F6HS12_VITVI	Phenylalanine ammonia-lyase. (469 aa)
	F6I0C2_VITVI	3-hydroxy-3-methylglutaryl coenzyme A reductase. (561 aa)
	F6I0P8_VITVI	3-hydroxy-3-methylglutaryl coenzyme A reductase. (575 aa)
	F6I2I6_VITVI	Uncharacterized protein. (308 aa)
	F6I6W1_VITVI	3-hydroxy-3-methylglutaryl coenzyme A reductase. (593 aa)
	STS-3	Stilbene synthase 3; Mediates resistance to pathogens which are sensitive to stilbenes; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family. (392 aa)
	lar1	Leucoanthocyanidin reductase 1. (346 aa)
	CHS3	Chalcone synthase; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family. (389 aa)

Your Current Organism:

Vitis vinifera

NCBI taxonomy Id: 29760
Other names: V. vinifera, Vitis vinifera L., Vitis vinifera subsp. vinifera, wine grape

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
4CL	CHI	F6HEF8	D7T475	Uncharacterized protein.	Chalcone-flavonone isomerase family protein; Belongs to the chalcone isomerase family.	0.441
4CL	CHS3	F6HEF8	Q8W3P6	Uncharacterized protein.	Chalcone synthase; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.	0.790
4CL	D7TCJ8_VITVI	F6HEF8	D7TCJ8	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.848
4CL	DFR	F6HEF8	F6H060	Uncharacterized protein.	Epimerase domain-containing protein.	0.729
4CL	F3H	F6HEF8	A2ICC8	Uncharacterized protein.	Flavanone 3-hydroxylase; Belongs to the iron/ascorbate-dependent oxidoreductase family.	0.806
4CL	F6HEB0_VITVI	F6HEF8	F6HEB0	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.944
4CL	F6HEB1_VITVI	F6HEF8	F6HEB1	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.849
4CL	F6HEB2_VITVI	F6HEF8	F6HEB2	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.944
4CL	F6HEB3_VITVI	F6HEF8	F6HEB3	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.945
4CL	F6HEB8_VITVI	F6HEF8	F6HEB8	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.944
4CL	F6HEC2_VITVI	F6HEF8	F6HEC2	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.945
4CL	F6HGU6_VITVI	F6HEF8	F6HGU6	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.852
4CL	F6HP39_VITVI	F6HEF8	F6HP39	Uncharacterized protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Chalcone/stilbene synthases family.	0.886
4CL	F6HS12_VITVI	F6HEF8	F6HS12	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.852
4CL	F6I2I6_VITVI	F6HEF8	F6I2I6	Uncharacterized protein.	Uncharacterized protein.	0.847
4CL	LAR2	F6HEF8	D7SIV3	Uncharacterized protein.	NmrA domain-containing protein.	0.616
4CL	PAL	F6HEF8	F6HEB5	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.944
4CL	PAL-2	F6HEF8	F6HEB9	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.946
4CL	PAL-3	F6HEF8	F6HEC0	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.946
4CL	PAL1	F6HEF8	A5BPT8	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.946