STRINGSTRING
TLL0358 TLL0358 S2540 S2540 PM0150 PM0150 STM2669 STM2669 STY0639 STY0639
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
TLL0358Hypothetical 3-Deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase; Predicted by orpheus program; predicted by glimmer program. (337 aa)
S2540Putative chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. (361 aa)
PM0150Putative chorismate mutase/prephenate dehydratase; Predicted by orpheus program; predicted by glimmer program. (391 aa)
STM2669Putative chorismate mutase/prephenate dehydrogenase; Predicted by orpheus program; predicted by glimmer program. (375 aa)
STY0639Hypothetical isochorismate synthase; Predicted by orpheus program; predicted by glimmer program. (399 aa)
Your Current Organism:
Photobacterium profundum
NCBI taxonomy Id: 298386
Other names: P. profundum SS9, Photobacterium SS9, Photobacterium profundum SS9, Photobacterium profundum str. SS9, Photobacterium profundum strain SS9, Photobacterium sp. (strain SS9), Photobacterium sp. SS9, deep-sea eubacterium SS9
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