STRINGSTRING
phoQ phoQ rstB rstB trg trg narX narX yfiN yfiN narQ narQ baeS baeS cpxA cpxA envZ envZ aer aer barA barA yhjK yhjK SDY_4127 SDY_4127 basS basS
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
phoQSensor protein PhoQ; Code: T; COG: COG0642. (486 aa)
rstBSensor histidine protein kinase; RstA regulator; Code: T; COG: COG0642. (433 aa)
trgMethyl-accepting chemotaxis protein III; Ribose sensor receptor; Code: NT; COG: COG0840. (477 aa)
narXNitrate/nitrate sensor; Histidine protein kinase acts on NarL regulator; Code: T; COG: COG3850. (598 aa)
yfiNConserved hypothetical protein; Code: T; COG: COG2199; orf. (265 aa)
narQSensor for nitrate reductase system; Protein histidine kinase (acts on NarP and narL); Code: T; COG: COG3850. (566 aa)
baeSSensor protein for BaeR; Code: T; COG: COG0642. (467 aa)
cpxAHistidine protein kinase; Probable sensor protein; acting on arcA; Code: T; COG: COG0642. (457 aa)
envZProtein histidine kinase/phosphatase sensor for OmpR; Modulates expression of ompF and ompC; Code: T; COG: COG0642. (450 aa)
aerAerotaxis sensor receptor, flavoprotein; Code: NT; COG: COG0840. (506 aa)
barASensor-regulator; Activates OmpR by phophorylation; Code: T; COG: COG0642. (918 aa)
yhjKConserved hypothetical protein; Code: T; COG: COG2200; orf. (651 aa)
SDY_4127Putative histidine kinase; Code: T; COG: COG0642. (754 aa)
basSSensor protein for basR; Code: T; COG: COG0642. (363 aa)
Your Current Organism:
Shigella dysenteriae
NCBI taxonomy Id: 300267
Other names: S. dysenteriae Sd197, Shigella dysenteriae Sd197, Shigella dysenteriae str. Sd197, Shigella dysenteriae strain Sd197
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