(14 nodes) Fatty acid degradation network (Salinibacter ruber)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	gcdH	glutaryl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028. (480 aa)
	SRU_0710	Alcohol dehydrogenase, zinc-containing; Identified by match to protein family HMM PF00107. (355 aa)
	SRU_1116	Acyl-CoA dehydrogenase, C-terminal domain family; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028. (398 aa)
	fadD	Putative acyl-CoA synthetase, long-chain-fatty acid:CoA ligase; Identified by match to protein family HMM PF00501. (632 aa)
	SRU_1210	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain family; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737. (802 aa)
	atoB	acetyl-CoA acetyltransferase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family. (401 aa)
	FadE	Oxidoreductase, acyl-CoA dehydrogenase family; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771. (856 aa)
	SRU_1228	Aldehyde dehydrogenase, mitochondrial precursor; Identified by match to protein family HMM PF00171. (529 aa)
	SRU_1456	Probable aldehyde dehydrogenase aldX; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family. (484 aa)
	yfcX	Fatty oxidation complex, alpha subunit; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; Belongs to the enoyl-CoA hydratase/isomerase family. (719 aa)
	hadHB	Fatty oxidation complex, beta subunit; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family. (460 aa)
	SRU_1547	acetyl-CoA acetyltransferase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family. (396 aa)
	SRU_1701	Acyl-coenzyme A oxidase I, putative; Identified by match to protein family HMM PF00441; match to protein family HMM PF01756; match to protein family HMM PF02770. (786 aa)
	SRU_2380	AMP-binding enzyme, putative; Identified by match to protein family HMM PF00501. (632 aa)

Your Current Organism:

Salinibacter ruber

NCBI taxonomy Id: 309807
Other names: S. ruber DSM 13855, Salinibacter ruber DSM 13855, Salinibacter ruber str. DSM 13855, Salinibacter ruber strain DSM 13855

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FadE	SRU_1116	SRU_1213	SRU_1116	Oxidoreductase, acyl-CoA dehydrogenase family; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771.	Acyl-CoA dehydrogenase, C-terminal domain family; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	0.906
FadE	SRU_1210	SRU_1213	SRU_1210	Oxidoreductase, acyl-CoA dehydrogenase family; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771.	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain family; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	0.944
FadE	SRU_1547	SRU_1213	SRU_1547	Oxidoreductase, acyl-CoA dehydrogenase family; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771.	acetyl-CoA acetyltransferase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	0.952
FadE	SRU_1701	SRU_1213	SRU_1701	Oxidoreductase, acyl-CoA dehydrogenase family; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771.	Acyl-coenzyme A oxidase I, putative; Identified by match to protein family HMM PF00441; match to protein family HMM PF01756; match to protein family HMM PF02770.	0.900
FadE	atoB	SRU_1213	SRU_1211	Oxidoreductase, acyl-CoA dehydrogenase family; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771.	acetyl-CoA acetyltransferase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	0.966
FadE	gcdH	SRU_1213	SRU_0115	Oxidoreductase, acyl-CoA dehydrogenase family; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771.	glutaryl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	0.913
FadE	hadHB	SRU_1213	SRU_1460	Oxidoreductase, acyl-CoA dehydrogenase family; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771.	Fatty oxidation complex, beta subunit; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	0.969
FadE	yfcX	SRU_1213	SRU_1459	Oxidoreductase, acyl-CoA dehydrogenase family; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771.	Fatty oxidation complex, alpha subunit; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; Belongs to the enoyl-CoA hydratase/isomerase family.	0.995
SRU_0710	SRU_1228	SRU_0710	SRU_1228	Alcohol dehydrogenase, zinc-containing; Identified by match to protein family HMM PF00107.	Aldehyde dehydrogenase, mitochondrial precursor; Identified by match to protein family HMM PF00171.	0.910
SRU_0710	SRU_1456	SRU_0710	SRU_1456	Alcohol dehydrogenase, zinc-containing; Identified by match to protein family HMM PF00107.	Probable aldehyde dehydrogenase aldX; Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.	0.910
SRU_1116	FadE	SRU_1116	SRU_1213	Acyl-CoA dehydrogenase, C-terminal domain family; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	Oxidoreductase, acyl-CoA dehydrogenase family; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771.	0.906
SRU_1116	SRU_1210	SRU_1116	SRU_1210	Acyl-CoA dehydrogenase, C-terminal domain family; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain family; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	0.918
SRU_1116	SRU_1547	SRU_1116	SRU_1547	Acyl-CoA dehydrogenase, C-terminal domain family; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	acetyl-CoA acetyltransferase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	0.548
SRU_1116	SRU_1701	SRU_1116	SRU_1701	Acyl-CoA dehydrogenase, C-terminal domain family; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	Acyl-coenzyme A oxidase I, putative; Identified by match to protein family HMM PF00441; match to protein family HMM PF01756; match to protein family HMM PF02770.	0.912
SRU_1116	atoB	SRU_1116	SRU_1211	Acyl-CoA dehydrogenase, C-terminal domain family; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	acetyl-CoA acetyltransferase; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	0.952
SRU_1116	gcdH	SRU_1116	SRU_0115	Acyl-CoA dehydrogenase, C-terminal domain family; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	glutaryl-CoA dehydrogenase; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	0.916
SRU_1116	hadHB	SRU_1116	SRU_1460	Acyl-CoA dehydrogenase, C-terminal domain family; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	Fatty oxidation complex, beta subunit; Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; match to protein family HMM TIGR01930; Belongs to the thiolase-like superfamily. Thiolase family.	0.952
SRU_1116	yfcX	SRU_1116	SRU_1459	Acyl-CoA dehydrogenase, C-terminal domain family; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	Fatty oxidation complex, alpha subunit; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737; Belongs to the enoyl-CoA hydratase/isomerase family.	0.992
SRU_1210	FadE	SRU_1210	SRU_1213	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain family; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	Oxidoreductase, acyl-CoA dehydrogenase family; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771.	0.944
SRU_1210	SRU_1116	SRU_1210	SRU_1116	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain family; Identified by match to protein family HMM PF00378; match to protein family HMM PF00725; match to protein family HMM PF02737.	Acyl-CoA dehydrogenase, C-terminal domain family; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.	0.918