Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| hfq | lsrR | VF_2323 | VF_A0400 | RNA chaperone Hfq (HF-I); RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | Transcriptional repressor. | 0.517 |
| hfq | luxO | VF_2323 | VF_0937 | RNA chaperone Hfq (HF-I); RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | Autoinducer repressor protein LuxO. | 0.734 |
| hfq | luxP | VF_2323 | VF_0707 | RNA chaperone Hfq (HF-I); RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | Periplasmic AI-2 binding protein LuxP. | 0.528 |
| hfq | luxQ | VF_2323 | VF_0708 | RNA chaperone Hfq (HF-I); RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | Membrane-bound sensor histidine kinase LuxQ. | 0.589 |
| hfq | luxS | VF_2323 | VF_0545 | RNA chaperone Hfq (HF-I); RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | S-ribosylhomocysteinase, autoinducer-2 synthase protein LuxS; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. | 0.640 |
| hfq | luxU | VF_2323 | VF_0938 | RNA chaperone Hfq (HF-I); RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | Autoinducer phosphorelay protein LuxU. | 0.642 |
| lsrR | hfq | VF_A0400 | VF_2323 | Transcriptional repressor. | RNA chaperone Hfq (HF-I); RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.517 |
| lsrR | luxO | VF_A0400 | VF_0937 | Transcriptional repressor. | Autoinducer repressor protein LuxO. | 0.495 |
| lsrR | luxP | VF_A0400 | VF_0707 | Transcriptional repressor. | Periplasmic AI-2 binding protein LuxP. | 0.660 |
| lsrR | luxQ | VF_A0400 | VF_0708 | Transcriptional repressor. | Membrane-bound sensor histidine kinase LuxQ. | 0.504 |
| lsrR | luxS | VF_A0400 | VF_0545 | Transcriptional repressor. | S-ribosylhomocysteinase, autoinducer-2 synthase protein LuxS; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. | 0.782 |
| lsrR | luxU | VF_A0400 | VF_0938 | Transcriptional repressor. | Autoinducer phosphorelay protein LuxU. | 0.495 |
| lsrR | mtn | VF_A0400 | VF_2128 | Transcriptional repressor. | 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Belongs to the PNP/UDP phosphorylase family. MtnN subfamily. | 0.442 |
| lsrR | rbsB | VF_A0400 | VF_1447 | Transcriptional repressor. | D-ribose-binding protein, RbsB. | 0.772 |
| luxO | hfq | VF_0937 | VF_2323 | Autoinducer repressor protein LuxO. | RNA chaperone Hfq (HF-I); RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.734 |
| luxO | lsrR | VF_0937 | VF_A0400 | Autoinducer repressor protein LuxO. | Transcriptional repressor. | 0.495 |
| luxO | luxP | VF_0937 | VF_0707 | Autoinducer repressor protein LuxO. | Periplasmic AI-2 binding protein LuxP. | 0.821 |
| luxO | luxQ | VF_0937 | VF_0708 | Autoinducer repressor protein LuxO. | Membrane-bound sensor histidine kinase LuxQ. | 0.868 |
| luxO | luxS | VF_0937 | VF_0545 | Autoinducer repressor protein LuxO. | S-ribosylhomocysteinase, autoinducer-2 synthase protein LuxS; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. | 0.821 |
| luxO | luxU | VF_0937 | VF_0938 | Autoinducer repressor protein LuxO. | Autoinducer phosphorelay protein LuxU. | 0.996 |
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