STRINGSTRING
LOC114156812 LOC114156812 Lrr1 Lrr1 ELOB ELOB UBE2M UBE2M Nae1 Nae1 dcun1d3 dcun1d3 ENSXCOP00000006170 ENSXCOP00000006170 ENSXCOP00000009752 ENSXCOP00000009752 NEDD8 NEDD8 rnf7 rnf7 UBA3 UBA3 rbx1 rbx1 ENSXCOP00000019315 ENSXCOP00000019315 ENSXCOP00000023000 ENSXCOP00000023000 ENSXCOP00000024151 ENSXCOP00000024151 Senp8 Senp8 Cul5 Cul5 ENSXCOP00000025259 ENSXCOP00000025259 fem1b fem1b vhl vhl
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC114156812Ubiquitin-like domain-containing protein. (83 aa)
Lrr1Zgc:77287. (422 aa)
ELOBElongin B. (126 aa)
UBE2MUbiquitin conjugating enzyme E2 M; Belongs to the ubiquitin-conjugating enzyme family. (172 aa)
Nae1NEDD8-activating enzyme E1 regulatory subunit; Regulatory subunit of the dimeric UBA3-NAE1 E1 enzyme. E1 activates NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-UBA3 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of UBE2M. Belongs to the ubiquitin-activating E1 family. ULA1 subfamily. (509 aa)
dcun1d3DCN1-like protein. (318 aa)
ENSXCOP00000006170Cullin 2; Belongs to the cullin family. (706 aa)
ENSXCOP00000009752DCN1-like protein. (256 aa)
NEDD8NEDD8 ubiquitin like modifier. (79 aa)
rnf7Ring finger protein 7. (110 aa)
UBA3Ubiquitin like modifier activating enzyme 3. (444 aa)
rbx1Ring-box 1, E3 ubiquitin protein ligase. (149 aa)
ENSXCOP00000019315Ubiquitin-conjugating enzyme E2F (putative); Belongs to the ubiquitin-conjugating enzyme family. (180 aa)
ENSXCOP00000023000Ubiquitin-like modifier activating enzyme 3. (426 aa)
ENSXCOP00000024151Elongin B. (117 aa)
Senp8SUMO peptidase family member, NEDD8 specific. (222 aa)
Cul5Cullin 5a; Belongs to the cullin family. (662 aa)
ENSXCOP00000025259DCN1-like protein. (272 aa)
fem1bFem-1 homolog b (C. elegans). (627 aa)
vhlVon Hippel-Lindau tumor suppressor. (164 aa)
Your Current Organism:
Xiphophorus couchianus
NCBI taxonomy Id: 32473
Other names: Limia couchiana, Monterrey platyfish, X. couchianus
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