(10 nodes) C2H2-type zinc-finger protein GLI-like, and SPOP, C-terminal BACK domain network (Neolamprologus brichardi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC102792310	Speckle type BTB/POZ protein. (372 aa)
	LOC102796920	GLI family zinc finger 1. (917 aa)
	LOC102798763	Kinesin family member 7; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1263 aa)
	LOC102789857	Suppressor of fused homolog. (471 aa)
	SPOP	Speckle type BTB/POZ protein. (374 aa)
	LOC102779559	GLI family zinc finger 3. (1592 aa)
	LOC102780049	Speckle type BTB/POZ protein like b. (392 aa)
	ENSNBRP00000026919	Protein kinase domain-containing protein. (451 aa)
	LOC102781676	Uncharacterized protein. (1519 aa)
	LOC102796796	Uncharacterized protein. (1368 aa)

Your Current Organism:

Neolamprologus brichardi

NCBI taxonomy Id: 32507
Other names: Lamprologus brichardi, N. brichardi, lyretail cichlid

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSNBRP00000026919	LOC102779559	ENSNBRP00000026919	ENSNBRP00000016574	Protein kinase domain-containing protein.	GLI family zinc finger 3.	0.895
ENSNBRP00000026919	LOC102781676	ENSNBRP00000026919	ENSNBRP00000027415	Protein kinase domain-containing protein.	Uncharacterized protein.	0.895
ENSNBRP00000026919	LOC102789857	ENSNBRP00000026919	ENSNBRP00000012652	Protein kinase domain-containing protein.	Suppressor of fused homolog.	0.992
ENSNBRP00000026919	LOC102796796	ENSNBRP00000026919	ENSNBRP00000027686	Protein kinase domain-containing protein.	Uncharacterized protein.	0.895
ENSNBRP00000026919	LOC102796920	ENSNBRP00000026919	ENSNBRP00000005624	Protein kinase domain-containing protein.	GLI family zinc finger 1.	0.895
ENSNBRP00000026919	LOC102798763	ENSNBRP00000026919	ENSNBRP00000011010	Protein kinase domain-containing protein.	Kinesin family member 7; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.985
LOC102779559	ENSNBRP00000026919	ENSNBRP00000016574	ENSNBRP00000026919	GLI family zinc finger 3.	Protein kinase domain-containing protein.	0.895
LOC102779559	LOC102780049	ENSNBRP00000016574	ENSNBRP00000026632	GLI family zinc finger 3.	Speckle type BTB/POZ protein like b.	0.937
LOC102779559	LOC102781676	ENSNBRP00000016574	ENSNBRP00000027415	GLI family zinc finger 3.	Uncharacterized protein.	0.843
LOC102779559	LOC102789857	ENSNBRP00000016574	ENSNBRP00000012652	GLI family zinc finger 3.	Suppressor of fused homolog.	0.945
LOC102779559	LOC102792310	ENSNBRP00000016574	ENSNBRP00000005014	GLI family zinc finger 3.	Speckle type BTB/POZ protein.	0.937
LOC102779559	LOC102796796	ENSNBRP00000016574	ENSNBRP00000027686	GLI family zinc finger 3.	Uncharacterized protein.	0.844
LOC102779559	LOC102796920	ENSNBRP00000016574	ENSNBRP00000005624	GLI family zinc finger 3.	GLI family zinc finger 1.	0.844
LOC102779559	LOC102798763	ENSNBRP00000016574	ENSNBRP00000011010	GLI family zinc finger 3.	Kinesin family member 7; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.956
LOC102779559	SPOP	ENSNBRP00000016574	ENSNBRP00000013761	GLI family zinc finger 3.	Speckle type BTB/POZ protein.	0.937
LOC102780049	LOC102779559	ENSNBRP00000026632	ENSNBRP00000016574	Speckle type BTB/POZ protein like b.	GLI family zinc finger 3.	0.937
LOC102780049	LOC102781676	ENSNBRP00000026632	ENSNBRP00000027415	Speckle type BTB/POZ protein like b.	Uncharacterized protein.	0.889
LOC102780049	LOC102789857	ENSNBRP00000026632	ENSNBRP00000012652	Speckle type BTB/POZ protein like b.	Suppressor of fused homolog.	0.895
LOC102780049	LOC102792310	ENSNBRP00000026632	ENSNBRP00000005014	Speckle type BTB/POZ protein like b.	Speckle type BTB/POZ protein.	0.841
LOC102780049	LOC102796796	ENSNBRP00000026632	ENSNBRP00000027686	Speckle type BTB/POZ protein like b.	Uncharacterized protein.	0.889