(4 nodes) ABC-type amino acid transporter activity network (Xenorhabdus griffiniae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KLU15496.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa)
	KLU16599.1	Arginine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (242 aa)
	metN	DL-methionine transporter ATP-binding subunit; Part of the metNIQ transport system for methionine; Derived by automated computational analysis using gene prediction method: Protein Homology. (343 aa)
	artP	Arginine transporter ATP-binding subunit; With ArtMQJI transports arginine across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology. (241 aa)

Your Current Organism:

Xenorhabdus griffiniae

NCBI taxonomy Id: 351672
Other names: CIP 109073, DSM 17911, X. griffiniae, Xenorhabdus griffiniae Tailliez et al. 2006, Xenorhabdus sp. ID10, strain ID10

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KLU15496.1	KLU16599.1	AAY47_10405	AAY47_05050	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.565
KLU15496.1	artP	AAY47_10405	AAY47_09390	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginine transporter ATP-binding subunit; With ArtMQJI transports arginine across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.538
KLU15496.1	metN	AAY47_10405	AAY47_08895	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DL-methionine transporter ATP-binding subunit; Part of the metNIQ transport system for methionine; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.547
KLU16599.1	KLU15496.1	AAY47_05050	AAY47_10405	Arginine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.565
KLU16599.1	artP	AAY47_05050	AAY47_09390	Arginine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginine transporter ATP-binding subunit; With ArtMQJI transports arginine across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.562
KLU16599.1	metN	AAY47_05050	AAY47_08895	Arginine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DL-methionine transporter ATP-binding subunit; Part of the metNIQ transport system for methionine; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.620
artP	KLU15496.1	AAY47_09390	AAY47_10405	Arginine transporter ATP-binding subunit; With ArtMQJI transports arginine across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.538
artP	KLU16599.1	AAY47_09390	AAY47_05050	Arginine transporter ATP-binding subunit; With ArtMQJI transports arginine across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.562
artP	metN	AAY47_09390	AAY47_08895	Arginine transporter ATP-binding subunit; With ArtMQJI transports arginine across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.	DL-methionine transporter ATP-binding subunit; Part of the metNIQ transport system for methionine; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.569
metN	KLU15496.1	AAY47_08895	AAY47_10405	DL-methionine transporter ATP-binding subunit; Part of the metNIQ transport system for methionine; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.547
metN	KLU16599.1	AAY47_08895	AAY47_05050	DL-methionine transporter ATP-binding subunit; Part of the metNIQ transport system for methionine; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.620
metN	artP	AAY47_08895	AAY47_09390	DL-methionine transporter ATP-binding subunit; Part of the metNIQ transport system for methionine; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginine transporter ATP-binding subunit; With ArtMQJI transports arginine across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.569