STRINGSTRING
APZ42_028796 APZ42_028796 APZ42_030708 APZ42_030708 APZ42_029507 APZ42_029507 APZ42_027442 APZ42_027442 APZ42_019398 APZ42_019398 APZ42_011829 APZ42_011829 APZ42_015953 APZ42_015953 APZ42_031384 APZ42_031384 APZ42_029508 APZ42_029508 APZ42_028782 APZ42_028782 APZ42_028799 APZ42_028799 APZ42_026040 APZ42_026040 APZ42_025328 APZ42_025328 APZ42_021140 APZ42_021140
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
APZ42_028796Geranylgeranyl pyrophosphate synthase/polyprenyl synthetase; Belongs to the FPP/GGPP synthase family. (314 aa)
APZ42_030708Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family. (309 aa)
APZ42_029507Geranylgeranyl pyrophosphate synthase/polyprenyl synthetase; Belongs to the FPP/GGPP synthase family. (390 aa)
APZ42_027442UPF0047 protein C4A8.02c. (196 aa)
APZ42_019398Myc box-dependent-interacting protein. (1195 aa)
APZ42_011829Nogo-B receptor. (272 aa)
APZ42_015953Isopentenyl-diphosphate Delta-isomerase 1. (222 aa)
APZ42_031384Farnesyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family. (347 aa)
APZ42_029508Decaprenyl-diphosphate synthase subunit; Belongs to the FPP/GGPP synthase family. (390 aa)
APZ42_028782Decaprenyl-diphosphate synthase subunit 2; Belongs to the FPP/GGPP synthase family. (332 aa)
APZ42_028799Decaprenyl-diphosphate synthase subunit 2; Belongs to the FPP/GGPP synthase family. (328 aa)
APZ42_026040Alkyl transferase; Belongs to the UPP synthase family. (298 aa)
APZ42_025328Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding. (509 aa)
APZ42_021140Diphosphomevalonate decarboxylase; Performs the first committed step in the biosynthesis of isoprenes. (381 aa)
Your Current Organism:
Daphnia magna
NCBI taxonomy Id: 35525
Other names: D. magna
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