(5 nodes) RNA polymerase II, core complex network (Daphnia magna)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APZ42_017655	DNA-directed RNA polymerases I, II, and III subunit RPABC2. (129 aa)
	EOG090X0PCK	DNA-directed RNA polymerases I, II, and III subunit RPABC5. (67 aa)
	APZ42_012093	DNA-directed RNA polymerase II subunit RPB3. (274 aa)
	APZ42_017061	DNA-directed RNA polymerase II subunit RPB7. (172 aa)
	EOG090X0J86	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (127 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_012093	APZ42_017061	A0A0P5ZDC7	A0A0P6DZI8	DNA-directed RNA polymerase II subunit RPB3.	DNA-directed RNA polymerase II subunit RPB7.	0.999
APZ42_012093	APZ42_017655	A0A0P5ZDC7	A0A0N8ENC8	DNA-directed RNA polymerase II subunit RPB3.	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	0.999
APZ42_012093	EOG090X0J86	A0A0P5ZDC7	A0A164MGX8	DNA-directed RNA polymerase II subunit RPB3.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
APZ42_012093	EOG090X0PCK	A0A0P5ZDC7	A0A0P5E8Z7	DNA-directed RNA polymerase II subunit RPB3.	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	0.999
APZ42_017061	APZ42_012093	A0A0P6DZI8	A0A0P5ZDC7	DNA-directed RNA polymerase II subunit RPB7.	DNA-directed RNA polymerase II subunit RPB3.	0.999
APZ42_017061	APZ42_017655	A0A0P6DZI8	A0A0N8ENC8	DNA-directed RNA polymerase II subunit RPB7.	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	0.999
APZ42_017061	EOG090X0J86	A0A0P6DZI8	A0A164MGX8	DNA-directed RNA polymerase II subunit RPB7.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
APZ42_017061	EOG090X0PCK	A0A0P6DZI8	A0A0P5E8Z7	DNA-directed RNA polymerase II subunit RPB7.	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	0.999
APZ42_017655	APZ42_012093	A0A0N8ENC8	A0A0P5ZDC7	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	DNA-directed RNA polymerase II subunit RPB3.	0.999
APZ42_017655	APZ42_017061	A0A0N8ENC8	A0A0P6DZI8	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	DNA-directed RNA polymerase II subunit RPB7.	0.999
APZ42_017655	EOG090X0J86	A0A0N8ENC8	A0A164MGX8	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
APZ42_017655	EOG090X0PCK	A0A0N8ENC8	A0A0P5E8Z7	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	0.999
EOG090X0J86	APZ42_012093	A0A164MGX8	A0A0P5ZDC7	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	DNA-directed RNA polymerase II subunit RPB3.	0.999
EOG090X0J86	APZ42_017061	A0A164MGX8	A0A0P6DZI8	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	DNA-directed RNA polymerase II subunit RPB7.	0.999
EOG090X0J86	APZ42_017655	A0A164MGX8	A0A0N8ENC8	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	0.999
EOG090X0J86	EOG090X0PCK	A0A164MGX8	A0A0P5E8Z7	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	0.999
EOG090X0PCK	APZ42_012093	A0A0P5E8Z7	A0A0P5ZDC7	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	DNA-directed RNA polymerase II subunit RPB3.	0.999
EOG090X0PCK	APZ42_017061	A0A0P5E8Z7	A0A0P6DZI8	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	DNA-directed RNA polymerase II subunit RPB7.	0.999
EOG090X0PCK	APZ42_017655	A0A0P5E8Z7	A0A0N8ENC8	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	0.999
EOG090X0PCK	EOG090X0J86	A0A0P5E8Z7	A0A164MGX8	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999