(16 nodes) Longin-like domain superfamily network (Daphnia magna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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Your Input:
	APZ42_000407	AP-3 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family. (268 aa)
	APZ42_034562	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (216 aa)
	APZ42_028181	Trafficking protein particle complex subunit 2. (140 aa)
	APZ42_031704	AP-3 complex subunit sigma-2. (189 aa)
	APZ42_028282	Signal recognition particle receptor subunit alpha. (630 aa)
	APZ42_026018	Vesicle-associated membrane protein 7. (133 aa)
	APZ42_016099	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (142 aa)
	APZ42_015169	AP-4 complex subunit sigma-1/sw-like protein. (142 aa)
	APZ42_013654	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (145 aa)
	EOG090X0HBC	EOG090X0HBC; Belongs to the synaptobrevin family. (213 aa)
	APZ42_011609	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. (515 aa)
	APZ42_002399	AP-1 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family. (349 aa)
	APZ42_025210	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex. (141 aa)
	APZ42_021443	AP-2 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family. (415 aa)
	EOG090X0HJH	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (142 aa)
	APZ42_016501	Synaptobrevin YKT6; Belongs to the synaptobrevin family. (201 aa)

Your Current Organism:

Daphnia magna

NCBI taxonomy Id: 35525
Other names: D. magna

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APZ42_000407	APZ42_002399	A0A164JP86	A0A164IAD9	AP-3 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	AP-1 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	0.445
APZ42_000407	APZ42_013654	A0A164JP86	A0A162QPP9	AP-3 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.462
APZ42_000407	APZ42_016099	A0A164JP86	A0A162NMK5	AP-3 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.494
APZ42_000407	APZ42_021443	A0A164JP86	A0A164WPI1	AP-3 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	AP-2 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	0.696
APZ42_000407	APZ42_031704	A0A164JP86	A0A0P4XAP2	AP-3 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	AP-3 complex subunit sigma-2.	0.988
APZ42_002399	APZ42_000407	A0A164IAD9	A0A164JP86	AP-1 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	AP-3 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	0.445
APZ42_002399	APZ42_013654	A0A164IAD9	A0A162QPP9	AP-1 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.972
APZ42_002399	APZ42_016099	A0A164IAD9	A0A162NMK5	AP-1 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.659
APZ42_002399	APZ42_021443	A0A164IAD9	A0A164WPI1	AP-1 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	AP-2 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	0.717
APZ42_002399	APZ42_026018	A0A164IAD9	A0A162DBZ2	AP-1 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	Vesicle-associated membrane protein 7.	0.626
APZ42_002399	APZ42_031704	A0A164IAD9	A0A0P4XAP2	AP-1 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	AP-3 complex subunit sigma-2.	0.852
APZ42_011609	APZ42_016501	A0A162SUV1	A0A165AG90	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	Synaptobrevin YKT6; Belongs to the synaptobrevin family.	0.747
APZ42_011609	APZ42_025210	A0A162SUV1	A0A164TCA9	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	0.999
APZ42_011609	APZ42_028282	A0A162SUV1	A0A162D7B5	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	Signal recognition particle receptor subunit alpha.	0.410
APZ42_011609	EOG090X0HBC	A0A162SUV1	A0A162SSQ9	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	EOG090X0HBC; Belongs to the synaptobrevin family.	0.847
APZ42_013654	APZ42_000407	A0A162QPP9	A0A164JP86	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP-3 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	0.462
APZ42_013654	APZ42_002399	A0A162QPP9	A0A164IAD9	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP-1 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	0.972
APZ42_013654	APZ42_016099	A0A162QPP9	A0A162NMK5	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	0.415
APZ42_013654	APZ42_021443	A0A162QPP9	A0A164WPI1	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	AP-2 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.	0.617
APZ42_013654	APZ42_026018	A0A162QPP9	A0A162DBZ2	AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.	Vesicle-associated membrane protein 7.	0.612