STRINGSTRING
rpoB rpoB secE secE AFU44143.1 AFU44143.1 AFU44112.1 AFU44112.1 AFU44110.1 AFU44110.1 tuf tuf AFU44066.1 AFU44066.1 AFU44037.1 AFU44037.1 AFU44021.1 AFU44021.1 AFU44018.1 AFU44018.1 AFU44014.1 AFU44014.1 AFU43977.1 AFU43977.1 AFU43970.1 AFU43970.1 AFU43937.1 AFU43937.1 AFU43849.1 AFU43849.1 AFU43818.1 AFU43818.1 AFU43815.1 AFU43815.1 AFU43778.1 AFU43778.1 AFU43751.1 AFU43751.1 AFU47971.1 AFU47971.1 AFU47988.1 AFU47988.1 AFU48002.1 AFU48002.1 AFU48027.1 AFU48027.1 rpoA rpoA secY secY AFU48138.1 AFU48138.1 AFU48164.1 AFU48164.1 AFU48169.1 AFU48169.1 AFU48187.1 AFU48187.1 AFU48189.1 AFU48189.1 AFU48263.1 AFU48263.1 secF secF secD secD AFU48303.1 AFU48303.1 AFU48363.1 AFU48363.1 AFU48384.1 AFU48384.1 AFU48392.1 AFU48392.1 AFU48444.1 AFU48444.1 AFU47962.1 AFU47962.1 AFU43740.1 AFU43740.1 AFU47923.1 AFU47923.1 AFU47831.1 AFU47831.1 AFU47786.1 AFU47786.1 AFU47779.1 AFU47779.1 AFU47755.1 AFU47755.1 AFU47741.1 AFU47741.1 AFU47699.1 AFU47699.1 AFU47692.1 AFU47692.1 AFU47587.1 AFU47587.1 AFU47441.1 AFU47441.1 AFU47405.1 AFU47405.1 AFU47329.1 AFU47329.1 AFU47281.1 AFU47281.1 AFU47267.1 AFU47267.1 AFU47090.1 AFU47090.1 AFU47063.1 AFU47063.1 AFU47044.1 AFU47044.1 AFU47029.1 AFU47029.1 AFU47000.1 AFU47000.1 AFU46998.1 AFU46998.1 AFU46859.1 AFU46859.1 AFU46761.1 AFU46761.1 AFU46751.1 AFU46751.1 AFU46686.1 AFU46686.1 AFU46670.1 AFU46670.1 AFU46654.1 AFU46654.1 AFU46649.1 AFU46649.1 AFU46588.1 AFU46588.1 AFU46561.1 AFU46561.1 AFU46476.1 AFU46476.1 AFU46442.1 AFU46442.1 AFU46319.1 AFU46319.1 katG katG AFU46226.1 AFU46226.1 AFU46201.1 AFU46201.1 AFU46182.1 AFU46182.1 AFU46124.1 AFU46124.1 AFU46097.1 AFU46097.1 AFU46091.1 AFU46091.1 msrA msrA AFU46024.1 AFU46024.1 AFU45984.1 AFU45984.1 AFU45883.1 AFU45883.1 msbA msbA AFU45815.1 AFU45815.1 AFU45813.1 AFU45813.1 AFU45754.1 AFU45754.1 AFU45753.1 AFU45753.1 ssuD ssuD AFU45732.1 AFU45732.1 AFU45725.1 AFU45725.1 AFU45568.1 AFU45568.1 AFU45557.1 AFU45557.1 ndk ndk AFU45363.1 AFU45363.1 AFU45349.1 AFU45349.1 AFU45342.1 AFU45342.1 AFU45341.1 AFU45341.1 AFU45332.1 AFU45332.1 AFU45310.1 AFU45310.1 AFU45264.1 AFU45264.1 AFU45250.1 AFU45250.1 secG secG AFU45213.1 AFU45213.1 AFU45117.1 AFU45117.1 AFU45116.1 AFU45116.1 AFU45075.1 AFU45075.1 AFU45046.1 AFU45046.1 AFU44923.1 AFU44923.1 AFU44883.1 AFU44883.1 AFU44867.1 AFU44867.1 AFU44821.1 AFU44821.1 AFU44798.1 AFU44798.1 AFU44739.1 AFU44739.1 rpoZ rpoZ AFU44688.1 AFU44688.1 AFU44687.1 AFU44687.1 AFU44684.1 AFU44684.1 secA secA AFU44589.1 AFU44589.1 AFU44504.1 AFU44504.1 AFU44502.1 AFU44502.1 AFU44501.1 AFU44501.1 AFU44500.1 AFU44500.1 AFU44448.1 AFU44448.1 AFU44350.1 AFU44350.1 AFU44321.1 AFU44321.1 AFU44251.1 AFU44251.1 AFU44232.1 AFU44232.1 rpoC rpoC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpoBDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1370 aa)
secEPreprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation; Belongs to the SecE/SEC61-gamma family. (128 aa)
AFU44143.1COG0050 GTPases - translation elongation factors. (396 aa)
AFU44112.1COG0477 Permeases of the major facilitator superfamily. (426 aa)
AFU44110.1Redoxin; COG0526 Thiol-disulfide isomerase and thioredoxins. (167 aa)
tufTranslation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (396 aa)
AFU44066.1Hypothetical protein; COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component. (322 aa)
AFU44037.1COG0477 Permeases of the major facilitator superfamily. (464 aa)
AFU44021.1Extracellular solute-binding protein; COG0747 ABC-type dipeptide transport system, periplasmic component. (545 aa)
AFU44018.1FAD-binding 9 siderophore-interacting domain-containing protein; COG2375 Siderophore-interacting protein. (270 aa)
AFU44014.1Lysophospholipid transporter LplT; COG0477 Permeases of the major facilitator superfamily. (434 aa)
AFU43977.1Alkylhydroperoxidase; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. (149 aa)
AFU43970.1COG1522 Transcriptional regulators. (149 aa)
AFU43937.1Hydrolase; COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold. (278 aa)
AFU43849.1Extracellular solute-binding protein; COG0747 ABC-type dipeptide transport system, periplasmic component. (529 aa)
AFU43818.1Carboxymuconolactone decarboxylase; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. (151 aa)
AFU43815.1Transporter; COG0477 Permeases of the major facilitator superfamily. (408 aa)
AFU43778.1COG3203 Outer membrane protein (porin). (364 aa)
AFU43751.1Hypothetical protein; COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold. (369 aa)
AFU47971.1Porin; COG3203 Outer membrane protein (porin). (364 aa)
AFU47988.1Periplasmic/membrane thiol peroxidase; COG0526 Thiol-disulfide isomerase and thioredoxins. (204 aa)
AFU48002.1Hypothetical protein; COG0477 Permeases of the major facilitator superfamily. (519 aa)
AFU48027.1COG1522 Transcriptional regulators. (171 aa)
rpoADNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (330 aa)
secYPreprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. (439 aa)
AFU48138.1Sec-c motif domain protein; COG3318 Predicted metal-binding protein related to the C-terminal domain of SecA. (284 aa)
AFU48164.1emrB/QacA subfamily drug resistance transporter; COG0477 Permeases of the major facilitator superfamily. (485 aa)
AFU48169.1Glutamate--cysteine ligase. (431 aa)
AFU48187.1Major facilitator superfamily transporter; COG2814 Arabinose efflux permease. (409 aa)
AFU48189.1COG3118 Thioredoxin domain-containing protein. (302 aa)
AFU48263.1EmrB/QacA subfamily drug resistance transporter; COG0477 Permeases of the major facilitator superfamily. (481 aa)
secFPreprotein translocase subunit SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. (316 aa)
secDPreprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. (627 aa)
AFU48303.1COG1522 Transcriptional regulators. (160 aa)
AFU48363.1N-acyl-phosphatidylethanolamine-hydrolyzing phospholipase D; COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold. (334 aa)
AFU48384.1COG0477 Permeases of the major facilitator superfamily. (392 aa)
AFU48392.1Porin; COG3203 Outer membrane protein (porin). (350 aa)
AFU48444.1COG0477 Permeases of the major facilitator superfamily. (394 aa)
AFU47962.1COG0477 Permeases of the major facilitator superfamily. (443 aa)
AFU43740.1Redoxin domain-containing protein; COG0526 Thiol-disulfide isomerase and thioredoxins. (193 aa)
AFU47923.1Thioredoxin; COG0526 Thiol-disulfide isomerase and thioredoxins. (145 aa)
AFU47831.1COG1985 Pyrimidine reductase, riboflavin biosynthesis. (213 aa)
AFU47786.1General substrate transporter; COG0477 Permeases of the major facilitator superfamily. (553 aa)
AFU47779.1COG1522 Transcriptional regulators. (143 aa)
AFU47755.1COG0477 Permeases of the major facilitator superfamily. (473 aa)
AFU47741.1COG1522 Transcriptional regulators. (162 aa)
AFU47699.1COG1132 ABC-type multidrug transport system, ATPase and permease components. (768 aa)
AFU47692.1Luciferase family oxidoreductase, group 1; COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases. (342 aa)
AFU47587.1COG1522 Transcriptional regulators. (163 aa)
AFU47441.1COG0477 Permeases of the major facilitator superfamily. (392 aa)
AFU47405.1COG0477 Permeases of the major facilitator superfamily. (405 aa)
AFU47329.1Tn552/IS1604 rve transposase; COG2801 Transposase and inactivated derivatives. (590 aa)
AFU47281.1Protein-tyrosine phosphatase, low molecular weight; COG0394 Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (168 aa)
AFU47267.1COG0394 Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (167 aa)
AFU47090.1COG1062 Zn-dependent alcohol dehydrogenases, class III; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily. (371 aa)
AFU47063.1COG0477 Permeases of the major facilitator superfamily. (448 aa)
AFU47044.1COG0477 Permeases of the major facilitator superfamily. (429 aa)
AFU47029.1COG0477 Permeases of the major facilitator superfamily. (432 aa)
AFU47000.1COG1522 Transcriptional regulators. (155 aa)
AFU46998.1COG1522 Transcriptional regulators. (157 aa)
AFU46859.1COG0394 Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (165 aa)
AFU46761.1Periplasmic phosphate-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family. (349 aa)
AFU46751.1Globin-like protein; COG2346 Truncated hemoglobins. (158 aa)
AFU46686.1Mammalian cell entry related domain-containing protein; COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component. (341 aa)
AFU46670.1ABC transporter-like protein; COG4172 ABC-type uncharacterized transport system, duplicated ATPase component; Belongs to the ABC transporter superfamily. (544 aa)
AFU46654.1Fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein; COG0492 Thioredoxin reductase. (188 aa)
AFU46649.1Hypothetical protein; COG0526 Thiol-disulfide isomerase and thioredoxins. (133 aa)
AFU46588.1COG0477 Permeases of the major facilitator superfamily. (455 aa)
AFU46561.1COG1522 Transcriptional regulators. (157 aa)
AFU46476.1Hypothetical protein. (727 aa)
AFU46442.1COG0477 Permeases of the major facilitator superfamily. (388 aa)
AFU46319.1Peroxidase-like enzyme; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. (193 aa)
katGCatalase/hydroperoxidase HPI(I); Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily. (733 aa)
AFU46226.1Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (193 aa)
AFU46201.1EmrB/QacA subfamily drug resistance transporter; COG0477 Permeases of the major facilitator superfamily. (547 aa)
AFU46182.1COG1132 ABC-type multidrug transport system, ATPase and permease components. (615 aa)
AFU46124.1COG1522 Transcriptional regulators. (150 aa)
AFU46097.1COG0477 Permeases of the major facilitator superfamily. (419 aa)
AFU46091.1Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family. (174 aa)
msrAPeptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. (180 aa)
AFU46024.1General substrate transporter; COG0477 Permeases of the major facilitator superfamily. (439 aa)
AFU45984.1Pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (557 aa)
AFU45883.12-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). (421 aa)
msbALipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. (600 aa)
AFU45815.1Membrane transport protein; COG0477 Permeases of the major facilitator superfamily. (396 aa)
AFU45813.1COG0477 Permeases of the major facilitator superfamily. (411 aa)
AFU45754.1Monooxygenase-like protein; COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases. (308 aa)
AFU45753.1Xenobiotic (desulfurization)monooxygenase subunit A, NtaA/SnaA/SoxA/DszA family protein; COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases. (179 aa)
ssuDAlkanesulfonate monooxygenase; Catalyzes the desulfonation of aliphatic sulfonates. Belongs to the SsuD family. (387 aa)
AFU45732.1FAD-dependent pyridine nucleotide-disulfide oxidoreductase; COG0492 Thioredoxin reductase. (346 aa)
AFU45725.1Hypothetical protein. (729 aa)
AFU45568.1Thioredoxin; COG0526 Thiol-disulfide isomerase and thioredoxins; Belongs to the thioredoxin family. (110 aa)
AFU45557.1Phosphate ABC transporter periplasmic phosphate-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family. (340 aa)
ndkMulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-phosphodiesterase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. (141 aa)
AFU45363.1Carboxymuconolactone decarboxylase family protein 5; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. (188 aa)
AFU45349.1Peptidylprolyl isomerase; COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1. (119 aa)
AFU45342.1Alkyl hydroperoxide reductase; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily. (191 aa)
AFU45341.1Bacterioferritin; Iron-storage protein. (158 aa)
AFU45332.1Porin; COG3203 Outer membrane protein (porin). (322 aa)
AFU45310.1COG0477 Permeases of the major facilitator superfamily. (405 aa)
AFU45264.1Bcr/CflA subfamily drug resistance transporter; COG0477 Permeases of the major facilitator superfamily. (413 aa)
AFU45250.1ABC transporter-like protein; COG1132 ABC-type multidrug transport system, ATPase and permease components. (611 aa)
secGPreprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. (121 aa)
AFU45213.1Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; COG1225 Peroxiredoxin. (161 aa)
AFU45117.1Globin; COG2346 Truncated hemoglobins. (158 aa)
AFU45116.1Hypothetical protein. (312 aa)
AFU45075.1Bcr/CflA subfamily drug resistance transporter; COG0477 Permeases of the major facilitator superfamily. (410 aa)
AFU45046.1COG0492 Thioredoxin reductase. (317 aa)
AFU44923.1Major facilitator superfamily transporter. (435 aa)
AFU44883.1COG0477 Permeases of the major facilitator superfamily. (414 aa)
AFU44867.1Redoxin domain-containing protein; COG0526 Thiol-disulfide isomerase and thioredoxins. (142 aa)
AFU44821.1Globin; COG2346 Truncated hemoglobins. (140 aa)
AFU44798.1Porin; COG3203 Outer membrane protein (porin). (346 aa)
AFU44739.1Major facilitator superfamily transporter; COG2814 Arabinose efflux permease. (397 aa)
rpoZDNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (67 aa)
AFU44688.1Binding-protein-dependent transport system inner membrane protein; COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components. (320 aa)
AFU44687.1COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components. (292 aa)
AFU44684.1ABC transporter substrate-binding protein; COG0747 ABC-type dipeptide transport system, periplasmic component. (496 aa)
secAPreprotein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family. (918 aa)
AFU44589.1Hypothetical protein; COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component. (162 aa)
AFU44504.1Binding-protein-dependent transport system inner membrane protein; COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components. (303 aa)
AFU44502.1COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components. (326 aa)
AFU44501.1Family 5 extracellular solute-binding protein; COG0747 ABC-type dipeptide transport system, periplasmic component. (526 aa)
AFU44500.1Porin; COG3203 Outer membrane protein (porin). (348 aa)
AFU44448.1Major facilitator superfamily protein; COG2814 Arabinose efflux permease. (400 aa)
AFU44350.1Hypothetical protein. (542 aa)
AFU44321.1COG1522 Transcriptional regulators. (160 aa)
AFU44251.1COG1522 Transcriptional regulators. (153 aa)
AFU44232.1COG0477 Permeases of the major facilitator superfamily. (399 aa)
rpoCDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1411 aa)
Your Current Organism:
Acidovorax sp. KKS102
NCBI taxonomy Id: 358220
Other names: A. sp. KKS102
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