(26 nodes) RNA polymerase II, holoenzyme network (Plasmodium falciparum)

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	PF3D7_0929000	Transcription initiation factor TFIID subunit 7, putative. (397 aa)
	PF3D7_0716400	Transcription initiation factor IIA subunit 1, putative. (174 aa)
	PF3D7_0510800	WD repeat-containing protein, putative. (642 aa)
	PF3D7_0717300	Transcription initiation factor IIE subunit alpha, putative. (392 aa)
	PF3D7_0303300	DNA-directed RNA polymerases I, II, and III subunit RPABC2, putative. (153 aa)
	PF3D7_0205500	DNA-directed RNA polymerase II 16 kDa subunit, putative. (132 aa)
	PF3D7_0323600	BSD domain-containing protein. (670 aa)
	PF3D7_0110400	DNA-directed RNA polymerase II subunit RPB9, putative. (249 aa)
	PF3D7_0934100	TFIIH basal transcription factor complex helicase XPD subunit. (1056 aa)
	PF3D7_0923000	DNA-directed RNA polymerase II subunit RPB3, putative. (335 aa)
	PF3D7_0921600	Tetratricopeptide repeat protein, putative. (1650 aa)
	PF3D7_0520700	CDC73 domain-containing protein, putative. (974 aa)
	PF3D7_0512300	CDK-activating kinase assembly factor MAT1. (260 aa)
	PF3D7_1244200	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (945 aa)
	PF3D7_1213700	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (145 aa)
	PF3D7_0708100	DNA-directed RNA polymerases I, II, and III subunit RPABC5, putative. (69 aa)
	PF3D7_1364800	DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative. (205 aa)
	PF3D7_1353500	RNA polymerase II transcription factor B subunit 4, putative. (326 aa)
	PF3D7_1342700	DNA-directed RNA polymerases I, II, and III subunit RPABC4, putative. (58 aa)
	PF3D7_1314900	General transcription factor IIH subunit. (401 aa)
	PF13_0023	Probable DNA-directed RNA polymerase II subunit RPB11; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB11 is part of the core element with the central large cleft (By similarity). (126 aa)
	PF3D7_1138800	WD repeat-containing protein, putative. (1920 aa)
	PF3D7_1037600	TFIIH basal transcription factor complex helicase XPB subunit, putative. (886 aa)
	PF3D7_1008100	Zinc finger protein, putative. (3853 aa)
	PF3D7_1463700	Cyclin 1; Belongs to the cyclin family. (326 aa)
	PF3D7_1447200	Uncharacterized protein. (529 aa)

Your Current Organism:

Plasmodium falciparum

NCBI taxonomy Id: 36329
Other names: P. falciparum 3D7, Plasmodium falciparum (isolate 3D7), Plasmodium falciparum 3D7

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PF13_0023	PF3D7_0110400	Q8IER7	Q8I241	Probable DNA-directed RNA polymerase II subunit RPB11; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB11 is part of the core element with the central large cleft (By similarity).	DNA-directed RNA polymerase II subunit RPB9, putative.	0.998
PF13_0023	PF3D7_0205500	Q8IER7	O96150	Probable DNA-directed RNA polymerase II subunit RPB11; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB11 is part of the core element with the central large cleft (By similarity).	DNA-directed RNA polymerase II 16 kDa subunit, putative.	0.998
PF13_0023	PF3D7_0303300	Q8IER7	O77315	Probable DNA-directed RNA polymerase II subunit RPB11; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB11 is part of the core element with the central large cleft (By similarity).	DNA-directed RNA polymerases I, II, and III subunit RPABC2, putative.	0.998
PF13_0023	PF3D7_0323600	Q8IER7	O97305	Probable DNA-directed RNA polymerase II subunit RPB11; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB11 is part of the core element with the central large cleft (By similarity).	BSD domain-containing protein.	0.908
PF13_0023	PF3D7_0512300	Q8IER7	Q8I3Y3	Probable DNA-directed RNA polymerase II subunit RPB11; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB11 is part of the core element with the central large cleft (By similarity).	CDK-activating kinase assembly factor MAT1.	0.908
PF13_0023	PF3D7_0520700	Q8IER7	Q8I3Q4	Probable DNA-directed RNA polymerase II subunit RPB11; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB11 is part of the core element with the central large cleft (By similarity).	CDC73 domain-containing protein, putative.	0.923
PF13_0023	PF3D7_0708100	Q8IER7	Q8IC08	Probable DNA-directed RNA polymerase II subunit RPB11; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB11 is part of the core element with the central large cleft (By similarity).	DNA-directed RNA polymerases I, II, and III subunit RPABC5, putative.	0.998
PF13_0023	PF3D7_0716400	Q8IER7	A0A143ZY73	Probable DNA-directed RNA polymerase II subunit RPB11; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB11 is part of the core element with the central large cleft (By similarity).	Transcription initiation factor IIA subunit 1, putative.	0.891
PF13_0023	PF3D7_0717300	Q8IER7	C0H4N3	Probable DNA-directed RNA polymerase II subunit RPB11; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB11 is part of the core element with the central large cleft (By similarity).	Transcription initiation factor IIE subunit alpha, putative.	0.920
PF13_0023	PF3D7_0921600	Q8IER7	Q8I2T7	Probable DNA-directed RNA polymerase II subunit RPB11; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB11 is part of the core element with the central large cleft (By similarity).	Tetratricopeptide repeat protein, putative.	0.862
PF13_0023	PF3D7_0923000	Q8IER7	Q8I2S6	Probable DNA-directed RNA polymerase II subunit RPB11; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB11 is part of the core element with the central large cleft (By similarity).	DNA-directed RNA polymerase II subunit RPB3, putative.	0.997
PF13_0023	PF3D7_0934100	Q8IER7	Q8I2H7	Probable DNA-directed RNA polymerase II subunit RPB11; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB11 is part of the core element with the central large cleft (By similarity).	TFIIH basal transcription factor complex helicase XPD subunit.	0.910
PF13_0023	PF3D7_1008100	Q8IER7	Q8IJW2	Probable DNA-directed RNA polymerase II subunit RPB11; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB11 is part of the core element with the central large cleft (By similarity).	Zinc finger protein, putative.	0.455
PF13_0023	PF3D7_1037600	Q8IER7	Q8IJ31	Probable DNA-directed RNA polymerase II subunit RPB11; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB11 is part of the core element with the central large cleft (By similarity).	TFIIH basal transcription factor complex helicase XPB subunit, putative.	0.919
PF13_0023	PF3D7_1213700	Q8IER7	Q8I5R8	Probable DNA-directed RNA polymerase II subunit RPB11; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB11 is part of the core element with the central large cleft (By similarity).	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.997
PF13_0023	PF3D7_1244200	Q8IER7	Q8I4Y8	Probable DNA-directed RNA polymerase II subunit RPB11; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB11 is part of the core element with the central large cleft (By similarity).	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.916
PF13_0023	PF3D7_1314900	Q8IER7	Q8IEG6	Probable DNA-directed RNA polymerase II subunit RPB11; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB11 is part of the core element with the central large cleft (By similarity).	General transcription factor IIH subunit.	0.919
PF13_0023	PF3D7_1342700	Q8IER7	Q8IDR2	Probable DNA-directed RNA polymerase II subunit RPB11; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB11 is part of the core element with the central large cleft (By similarity).	DNA-directed RNA polymerases I, II, and III subunit RPABC4, putative.	0.998
PF13_0023	PF3D7_1353500	Q8IER7	Q8IDG5	Probable DNA-directed RNA polymerase II subunit RPB11; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB11 is part of the core element with the central large cleft (By similarity).	RNA polymerase II transcription factor B subunit 4, putative.	0.908
PF13_0023	PF3D7_1364800	Q8IER7	Q8ID59	Probable DNA-directed RNA polymerase II subunit RPB11; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB11 is part of the core element with the central large cleft (By similarity).	DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative.	0.998