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rpoH rpoH ABN56244.1 ABN56244.1 ABN56245.1 ABN56245.1 ABN56246.1 ABN56246.1 ABN56247.1 ABN56247.1 ABN56248.1 ABN56248.1 ABN56382.1 ABN56382.1 tfb tfb ABN56722.1 ABN56722.1 tbp tbp tbp-2 tbp-2 ABN57324.1 ABN57324.1 tfe tfe ABN57602.1 ABN57602.1 rpoD rpoD rpoN rpoN ABN57734.1 ABN57734.1 ABN57886.1 ABN57886.1 ABN58091.1 ABN58091.1 ABN58165.1 ABN58165.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpoHDNA-directed RNA polymerase, subunit H; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoH/eukaryotic RPB5 RNA polymerase subunit family. (83 aa)
ABN56244.1PFAM: RNA polymerase subunit, RPB5; KEGG: mhu:Mhun_0049 RNA polymerase subunit, RPB5. (83 aa)
ABN56245.1PFAM: RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 3; KEGG: mhu:Mhun_0050 DNA-directed RNA polymerase. (513 aa)
ABN56246.1DNA-directed RNA polymerase, subunit B; PFAM: RNA polymerase Rpb2, domain 6; RNA polymerase Rpb2, domain 7; RNA polymerase Rpb2, domain 4; RNA polymerase Rpb2, domain 5; KEGG: mhu:Mhun_0051 DNA-directed RNA polymerase. (604 aa)
ABN56247.1KEGG: mhu:Mhun_0052 DNA-directed RNA polymerase, subunit A'; TIGRFAM: DNA-directed RNA polymerase subunit A'; PFAM: RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 4; SMART: RNA polymerase I subunit A domain protein. (882 aa)
ABN56248.1KEGG: mhu:Mhun_0053 DNA-directed RNA polymerase, subunit A''; TIGRFAM: DNA-directed RNA polymerase, subunit A''; PFAM: RNA polymerase Rpb1, domain 5. (390 aa)
ABN56382.1PFAM: helicase domain protein; type III restriction enzyme, res subunit; SMART: DEAD-like helicases-like; KEGG: lbu:LBUL_1663 DNA or RNA helicase of superfamily II. (1062 aa)
tfbTranscription initiation factor IIB (TFIIB); Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre-initiation complex (DNA-TBP-TFIIB). (337 aa)
ABN56722.1SMART: DEXDc2; helicase c2; DEAD-like helicases-like; KEGG: mhu:Mhun_0965 helicase C2. (669 aa)
tbpTATA binding protein of transcription factor TFIID; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation. (193 aa)
tbp-2TATA binding protein of transcription factor TFIID; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation. (187 aa)
ABN57324.1DNA-directed RNA polymerase, subunit M; TIGRFAM: transcription factor S; PFAM: Transcription factor TFIIS; DNA-directed RNA polymerase, M/15 kDa subunit; KEGG: afu:AF1235 DNA-directed RNA polymerase subunit M; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (104 aa)
tfeTranscription factor IIE (TFIIE), alpha subunit; Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabilizing elo [...] (173 aa)
ABN57602.1DNA-directed RNA polymerase, subunit P; SMART: RNA polymerase Rbp10; KEGG: mhu:Mhun_2285 RNA polymerase Rbp10. (43 aa)
rpoDDNA-directed RNA polymerase, subunit D; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoD/eukaryotic RPB3 RNA polymerase subunit family. (276 aa)
rpoNDNA-directed RNA polymerase, subunit N; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal RpoN/eukaryotic RPB10 RNA polymerase subunit family. (62 aa)
ABN57734.1DNA-directed RNA polymerase, subunit K; PFAM: RNA polymerase Rpb6; KEGG: mhu:Mhun_2894 RNA polymerase Rpb6. (55 aa)
ABN57886.1DNA-directed RNA polymerase, subunit F; PFAM: RNA polymerase Rpb4; KEGG: mhu:Mhun_3027 RNA polymerase Rpb4. (116 aa)
ABN58091.1KEGG: mhu:Mhun_2336 RNA polymerase, dimerisation. (92 aa)
ABN58165.1TIGRFAM: DNA-directed RNA polymerase; PFAM: RNA binding S1 domain protein; RNA polymerase Rpb7-like; KEGG: mhu:Mhun_2863 DNA-directed RNA polymerase. (188 aa)
Your Current Organism:
Methanoculleus marisnigri
NCBI taxonomy Id: 368407
Other names: M. marisnigri JR1, Methanoculleus marisnigri JR1, Methanoculleus marisnigri str. JR1, Methanoculleus marisnigri strain JR1
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