Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABP55574.1 | ABP55988.1 | Strop_3140 | Strop_3557 | SSU ribosomal protein S1P; PFAM: RNA binding S1 domain protein. | Hypothetical protein. | 0.816 |
| ABP55574.1 | hpf | Strop_3140 | Strop_0971 | SSU ribosomal protein S1P; PFAM: RNA binding S1 domain protein. | Sigma 54 modulation protein / SSU ribosomal protein S30P; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | 0.816 |
| ABP55574.1 | rpsB | Strop_3140 | Strop_1322 | SSU ribosomal protein S1P; PFAM: RNA binding S1 domain protein. | PFAM: ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.982 |
| ABP55574.1 | rpsC | Strop_3140 | Strop_3917 | SSU ribosomal protein S1P; PFAM: RNA binding S1 domain protein. | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.966 |
| ABP55574.1 | rpsE | Strop_3140 | Strop_3906 | SSU ribosomal protein S1P; PFAM: RNA binding S1 domain protein. | SSU ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | 0.988 |
| ABP55574.1 | rpsG | Strop_3140 | Strop_3927 | SSU ribosomal protein S1P; PFAM: RNA binding S1 domain protein. | SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.985 |
| ABP55574.1 | rpsI | Strop_3140 | Strop_3863 | SSU ribosomal protein S1P; PFAM: RNA binding S1 domain protein. | PFAM: ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.962 |
| ABP55574.1 | rpsN | Strop_3140 | Strop_2853 | SSU ribosomal protein S1P; PFAM: RNA binding S1 domain protein. | SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.912 |
| ABP55574.1 | rpsQ | Strop_3140 | Strop_3914 | SSU ribosomal protein S1P; PFAM: RNA binding S1 domain protein. | SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.984 |
| ABP55988.1 | ABP55574.1 | Strop_3557 | Strop_3140 | Hypothetical protein. | SSU ribosomal protein S1P; PFAM: RNA binding S1 domain protein. | 0.816 |
| ABP55988.1 | rpsB | Strop_3557 | Strop_1322 | Hypothetical protein. | PFAM: ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.854 |
| ABP55988.1 | rpsC | Strop_3557 | Strop_3917 | Hypothetical protein. | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.854 |
| ABP55988.1 | rpsE | Strop_3557 | Strop_3906 | Hypothetical protein. | SSU ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | 0.864 |
| ABP55988.1 | rpsG | Strop_3557 | Strop_3927 | Hypothetical protein. | SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.854 |
| ABP55988.1 | rpsI | Strop_3557 | Strop_3863 | Hypothetical protein. | PFAM: ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.871 |
| ABP55988.1 | rpsN | Strop_3557 | Strop_2853 | Hypothetical protein. | SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.827 |
| ABP55988.1 | rpsQ | Strop_3557 | Strop_3914 | Hypothetical protein. | SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.855 |
| hpf | ABP55574.1 | Strop_0971 | Strop_3140 | Sigma 54 modulation protein / SSU ribosomal protein S30P; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | SSU ribosomal protein S1P; PFAM: RNA binding S1 domain protein. | 0.816 |
| hpf | rpsB | Strop_0971 | Strop_1322 | Sigma 54 modulation protein / SSU ribosomal protein S30P; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | PFAM: ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.854 |
| hpf | rpsC | Strop_0971 | Strop_3917 | Sigma 54 modulation protein / SSU ribosomal protein S30P; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. | SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.897 |
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