32 items (Arabidopsis thaliana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SIB2	Sigma factor binding protein 2, chloroplastic; Functions as activator of WRKY33 in plant defense against necrotrophic pathogens by stimulating the DNA-binding activity of WRKY33. (141 aa)
	T19P19.110	VQ motif-containing protein. (296 aa)
	NSRB	Nuclear speckle RNA-binding protein B; Alternative splicing (AS) regulator that binds to specific mRNAs and modulates auxin effects on the transcriptome. Displaced from its targets upon binding to AS competitor long non-coding RNA (ASCO- RNA). (421 aa)
	dl3605w	VQ motif-containing protein. (193 aa)
	VQ13	VQ motif-containing protein 13; May modulate WRKY transcription factor activities. (204 aa)
	VQ17	VQ motif-containing protein 17; May function as positive regulator of plant growth. (172 aa)
	F18F4.100	VQ motif-containing protein. (208 aa)
	VQ18	VQ motif-containing protein 18; May function as positive regulator of plant growth. (188 aa)
	CAMBP25	Calmodulin-binding protein 25; Calmodulin-binding protein that functions as a negative regulator of osmotic stress tolerance. (238 aa)
	T20K9.9	VQ motif-containing protein. (114 aa)
	IKU1	Protein HAIKU1; Modulates seed size by negatively regulating the cellularization of syncytial endosperm. May function by binding and modulating the activity of WRKY10 transcription factor. (402 aa)
	VQ1	VQ motif-containing protein 1; May modulate WRKY transcription factor activities. (98 aa)
	VQ4	VQ motif-containing protein 4; Acts as negative regulator of WRKY33 transcription factor activity in the promotion of defense gene expression. Acts as a negative regulator of pathogen-associated molecular pattern (PAMP)- induced responses to modulate resistance to pathogens. (247 aa)
	MKS1	Protein MKS1; Regulator of plant defense response. May contribute to MPK4- regulated defense activation by coupling the kinase to specific WRKY transcription factors. (222 aa)
	VQ10	VQ motif-containing protein 10; May modulate WRKY transcription factor activities. (108 aa)
	F10O5.2	VQ motif-containing protein. (302 aa)
	VQ8	VQ motif-containing protein 8, chloroplastic; May be involved in chloroplast development. (152 aa)
	VQ33	VQ motif-containing protein 33; May modulate WRKY transcription factor activities. (243 aa)
	MZA15.20	VQ motif-containing protein. (237 aa)
	MQN23.11	VQ motif-containing protein. (362 aa)
	VQ31	VQ motif-containing protein 31; May modulate WRKY transcription factor activities. (173 aa)
	SIB1	Sigma factor binding protein 1, chloroplastic; Contributes to plant defense. May regulate chloroplast metabolism upon infection with pathogens such as Pseudomonas syringae. Functions as activator of WRKY33 in plant defense against necrotrophic pathogens by stimulating the DNA-binding activity of WRKY33. (151 aa)
	VQ19	VQ motif-containing protein 19; May modulate WRKY transcription factor activities. (219 aa)
	T8M16_210	VQ motif-containing protein. (245 aa)
	VQ22	VQ motif-containing protein 22; May function as positive regulator of plant growth. (192 aa)
	F16F4.1	VQ motif-containing protein. (239 aa)
	VQ20	VQ motif-containing protein 20; May function as negative regulator of plant defense. (285 aa)
	T2O9.70	VQ motif-containing protein. (157 aa)
	VQ25	VQ motif-containing protein 25; May function as negative regulator of plant defense. (175 aa)
	VQ11	VQ motif-containing protein 11; May modulate WRKY transcription factor activities. (177 aa)
	VQ9	VQ motif-containing protein 9; Functions as a negative regulator of salt stress response. Functions as repressor of WRKY8 transcription factor by decreasing the DNA-binding activity of WRKY8 and acts antagonistically with WRKY8 to regulate sodium and potassium homeostasis under salt stress. (311 aa)
	VQ29	VQ motif-containing protein 29; May function as negative regulator of flowering transition. (123 aa)

Your Current Organism:

Arabidopsis thaliana

NCBI taxonomy Id: 3702
Other names: A. thaliana, Arabidopsis thaliana (L.) Heynh., mouse-ear cress, thale cress, thale-cress

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAMBP25	F10O5.2	O80683	Q9C8B9	Calmodulin-binding protein 25; Calmodulin-binding protein that functions as a negative regulator of osmotic stress tolerance.	VQ motif-containing protein.	0.696
CAMBP25	F16F4.1	O80683	Q9LMP5	Calmodulin-binding protein 25; Calmodulin-binding protein that functions as a negative regulator of osmotic stress tolerance.	VQ motif-containing protein.	0.630
CAMBP25	F18F4.100	O80683	O49427	Calmodulin-binding protein 25; Calmodulin-binding protein that functions as a negative regulator of osmotic stress tolerance.	VQ motif-containing protein.	0.563
CAMBP25	IKU1	O80683	O82170	Calmodulin-binding protein 25; Calmodulin-binding protein that functions as a negative regulator of osmotic stress tolerance.	Protein HAIKU1; Modulates seed size by negatively regulating the cellularization of syncytial endosperm. May function by binding and modulating the activity of WRKY10 transcription factor.	0.906
CAMBP25	MKS1	O80683	Q8LGD5	Calmodulin-binding protein 25; Calmodulin-binding protein that functions as a negative regulator of osmotic stress tolerance.	Protein MKS1; Regulator of plant defense response. May contribute to MPK4- regulated defense activation by coupling the kinase to specific WRKY transcription factors.	0.886
CAMBP25	MQN23.11	O80683	Q9FJP8	Calmodulin-binding protein 25; Calmodulin-binding protein that functions as a negative regulator of osmotic stress tolerance.	VQ motif-containing protein.	0.651
CAMBP25	MZA15.20	O80683	Q9FIP7	Calmodulin-binding protein 25; Calmodulin-binding protein that functions as a negative regulator of osmotic stress tolerance.	VQ motif-containing protein.	0.570
CAMBP25	NSRB	O80683	F4HWF9	Calmodulin-binding protein 25; Calmodulin-binding protein that functions as a negative regulator of osmotic stress tolerance.	Nuclear speckle RNA-binding protein B; Alternative splicing (AS) regulator that binds to specific mRNAs and modulates auxin effects on the transcriptome. Displaced from its targets upon binding to AS competitor long non-coding RNA (ASCO- RNA).	0.540
CAMBP25	SIB1	O80683	Q9LDH1	Calmodulin-binding protein 25; Calmodulin-binding protein that functions as a negative regulator of osmotic stress tolerance.	Sigma factor binding protein 1, chloroplastic; Contributes to plant defense. May regulate chloroplast metabolism upon infection with pathogens such as Pseudomonas syringae. Functions as activator of WRKY33 in plant defense against necrotrophic pathogens by stimulating the DNA-binding activity of WRKY33.	0.909
CAMBP25	SIB2	O80683	O80669	Calmodulin-binding protein 25; Calmodulin-binding protein that functions as a negative regulator of osmotic stress tolerance.	Sigma factor binding protein 2, chloroplastic; Functions as activator of WRKY33 in plant defense against necrotrophic pathogens by stimulating the DNA-binding activity of WRKY33.	0.926
CAMBP25	T19P19.110	O80683	A0A1P8B4F7	Calmodulin-binding protein 25; Calmodulin-binding protein that functions as a negative regulator of osmotic stress tolerance.	VQ motif-containing protein.	0.696
CAMBP25	T20K9.9	O80683	O81005	Calmodulin-binding protein 25; Calmodulin-binding protein that functions as a negative regulator of osmotic stress tolerance.	VQ motif-containing protein.	0.733
CAMBP25	T2O9.70	O80683	Q9M1D4	Calmodulin-binding protein 25; Calmodulin-binding protein that functions as a negative regulator of osmotic stress tolerance.	VQ motif-containing protein.	0.696
CAMBP25	VQ1	O80683	Q1G3U8	Calmodulin-binding protein 25; Calmodulin-binding protein that functions as a negative regulator of osmotic stress tolerance.	VQ motif-containing protein 1; May modulate WRKY transcription factor activities.	0.795
CAMBP25	VQ10	O80683	Q8VYI5	Calmodulin-binding protein 25; Calmodulin-binding protein that functions as a negative regulator of osmotic stress tolerance.	VQ motif-containing protein 10; May modulate WRKY transcription factor activities.	0.804
CAMBP25	VQ11	O80683	Q9M8L3	Calmodulin-binding protein 25; Calmodulin-binding protein that functions as a negative regulator of osmotic stress tolerance.	VQ motif-containing protein 11; May modulate WRKY transcription factor activities.	0.795
CAMBP25	VQ13	O80683	O23660	Calmodulin-binding protein 25; Calmodulin-binding protein that functions as a negative regulator of osmotic stress tolerance.	VQ motif-containing protein 13; May modulate WRKY transcription factor activities.	0.779
CAMBP25	VQ17	O80683	O48522	Calmodulin-binding protein 25; Calmodulin-binding protein that functions as a negative regulator of osmotic stress tolerance.	VQ motif-containing protein 17; May function as positive regulator of plant growth.	0.898
CAMBP25	VQ18	O80683	O64868	Calmodulin-binding protein 25; Calmodulin-binding protein that functions as a negative regulator of osmotic stress tolerance.	VQ motif-containing protein 18; May function as positive regulator of plant growth.	0.892
CAMBP25	VQ19	O80683	Q9LDZ1	Calmodulin-binding protein 25; Calmodulin-binding protein that functions as a negative regulator of osmotic stress tolerance.	VQ motif-containing protein 19; May modulate WRKY transcription factor activities.	0.796