STRINGSTRING
RD1_0864 RD1_0864 RD1_0865 RD1_0865 RD1_0866 RD1_0866 rbsC rbsC gnl gnl RD1_2210 RD1_2210 RD1_2211 RD1_2211 rbcS rbcS RD1_2213 RD1_2213 frcR frcR torT torT gnl-2 gnl-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RD1_0864Ribose ABC transporter, periplasmic binding component, putative. (378 aa)
RD1_0865Sugar ABC transporter, ATP-binding protein, putative. (519 aa)
RD1_0866Ribose ABC transporter, permease protein, putative; Belongs to the binding-protein-dependent transport system permease family. (351 aa)
rbsCRibose ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. (326 aa)
gnlGluconolactonase, putative. (305 aa)
RD1_2210Conserved hypothetical protein. (208 aa)
RD1_2211Sugar ABC transporter, ATP-binding protein, putative. (257 aa)
rbcSRibose ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. (353 aa)
RD1_2213Sugar ABC transporter protein, putative. (338 aa)
frcRTranscription regulator, ROK family FrcR, putative. (402 aa)
torTPeriplasmic protein TorT. (336 aa)
gnl-2Gluconolactonase, putative. (310 aa)
Your Current Organism:
Roseobacter denitrificans
NCBI taxonomy Id: 375451
Other names: Erythrobacter sp. OCh114, R. denitrificans OCh 114, Roseobacter denitrificans ATCC 33942, Roseobacter denitrificans DSM 7001, Roseobacter denitrificans OCh 114, Roseobacter denitrificans str. OCh 114, Roseobacter denitrificans strain OCh 114, Roseobacter sp. OCh114
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