(29 nodes) Mixed, incl. Oligopeptide/dipeptide ABC transporter, C-terminal, and Peptide/nickel binding protein, MppA-type network (Aeromonas hydrophila)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	sapF	Peptide ABC transporter, ATP-binding protein SapF; Identified by similarity to SP:P36638; match to protein family HMM PF00005. (261 aa)
	sapD	Peptide ABC transporter, ATP-binding protein SapD; Identified by similarity to SP:P36636; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily. (332 aa)
	sapC	Peptide ABC transporter, permease protein SapC; Identified by similarity to SP:P0A2J5; match to protein family HMM PF00528. (297 aa)
	sapB	Peptide ABC transporter, permease protein SapB; Identified by similarity to SP:P0A2J3; match to protein family HMM PF00528. (319 aa)
	sapA	Peptide ABC transporter, periplasmic peptide-binding protein SapA; Identified by similarity to SP:P36634; match to protein family HMM PF00496. (521 aa)
	AHA_2001	Periplasmic murein peptide-binding protein; Identified by match to protein family HMM PF00496. (538 aa)
	AHA_2516	ATPase protein DppE; Identified by match to protein family HMM PF00005. (213 aa)
	AHA_2517	ABC nickel/di-oligopepetide transporter, ATP binding subunit; Identified by match to protein family HMM PF00005. (262 aa)
	AHA_2518	ABC nickel/di-oligopepetide transporter, permease subunit; Identified by match to protein family HMM PF00528. (270 aa)
	AHA_2519	ABC nickel/di-oligopepetide transporter, permease subunit; Identified by match to protein family HMM PF00528. (334 aa)
	AHA_2520	ABC transporter, periplasmic nickel/di-oligopepetide binding protein; Identified by match to protein family HMM PF00496. (543 aa)
	AHA_2609	Oligopeptide ABC transporter, ATP-binding protein OppF; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily. (331 aa)
	AHA_2610	Oligopeptide ABC transporter, ATP-binding protein OppD; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily. (326 aa)
	AHA_2611	Oligopeptide ABC transporter, permease protein OppC; Identified by match to protein family HMM PF00528. (303 aa)
	OppB	Oligopeptide ABC transporter, permease protein OppB; Identified by match to protein family HMM PF00528. (306 aa)
	AHA_2613	Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; Identified by match to protein family HMM PF00496. (539 aa)
	AHA_2849	Periplasmic murein peptide-binding protein; Identified by match to protein family HMM PF00496. (587 aa)
	AHA_3093	Peptide ABC transporter, periplasmic peptide-binding protein; Identified by match to protein family HMM PF00496. (561 aa)
	AHA_3094	Peptide ABC transporter, permease protein; Identified by match to protein family HMM PF00528. (327 aa)
	AHA_3095	Chitooligosaccharide transport system permease protein; Identified by match to protein family HMM PF00528. (306 aa)
	AHA_3096	Peptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily. (340 aa)
	AHA_3097	Oligopeptide transport ATP-binding protein AppF; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily. (330 aa)
	AHA_3322	Dipeptide transport system permease protein DppC; Identified by match to protein family HMM PF00528. (313 aa)
	AHA_3323	Dipeptide transport system permease protein DppB; Identified by match to protein family HMM PF00528. (324 aa)
	AHA_3324	Peptide ABC transporter, periplasmic peptide-binding protein; Identified by match to protein family HMM PF00496. (518 aa)
	AHA_3325	Dipeptide transport ATP-binding protein DppD; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily. (574 aa)
	AHA_3428	Oligopeptide transport ATP-binding protein AppF; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily. (333 aa)
	AHA_3429	Oligopeptide transport ATP-binding protein OppD; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily. (347 aa)
	AHA_3658	Periplasmic murein peptide-binding protein; Identified by match to protein family HMM PF00496. (534 aa)

Your Current Organism:

Aeromonas hydrophila

NCBI taxonomy Id: 380703
Other names: A. hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila ATCC 7966, Aeromonas hydrophila subsp. hydrophila str. ATCC 7966, Aeromonas hydrophila subsp. hydrophila strain ATCC 7966

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AHA_2001	AHA_2518	AHA_2001	AHA_2518	Periplasmic murein peptide-binding protein; Identified by match to protein family HMM PF00496.	ABC nickel/di-oligopepetide transporter, permease subunit; Identified by match to protein family HMM PF00528.	0.664
AHA_2001	AHA_2519	AHA_2001	AHA_2519	Periplasmic murein peptide-binding protein; Identified by match to protein family HMM PF00496.	ABC nickel/di-oligopepetide transporter, permease subunit; Identified by match to protein family HMM PF00528.	0.688
AHA_2001	AHA_2520	AHA_2001	AHA_2520	Periplasmic murein peptide-binding protein; Identified by match to protein family HMM PF00496.	ABC transporter, periplasmic nickel/di-oligopepetide binding protein; Identified by match to protein family HMM PF00496.	0.433
AHA_2001	AHA_2609	AHA_2001	AHA_2609	Periplasmic murein peptide-binding protein; Identified by match to protein family HMM PF00496.	Oligopeptide ABC transporter, ATP-binding protein OppF; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	0.981
AHA_2001	AHA_2610	AHA_2001	AHA_2610	Periplasmic murein peptide-binding protein; Identified by match to protein family HMM PF00496.	Oligopeptide ABC transporter, ATP-binding protein OppD; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	0.981
AHA_2001	AHA_2611	AHA_2001	AHA_2611	Periplasmic murein peptide-binding protein; Identified by match to protein family HMM PF00496.	Oligopeptide ABC transporter, permease protein OppC; Identified by match to protein family HMM PF00528.	0.982
AHA_2001	AHA_2613	AHA_2001	AHA_2613	Periplasmic murein peptide-binding protein; Identified by match to protein family HMM PF00496.	Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; Identified by match to protein family HMM PF00496.	0.905
AHA_2001	AHA_2849	AHA_2001	AHA_2849	Periplasmic murein peptide-binding protein; Identified by match to protein family HMM PF00496.	Periplasmic murein peptide-binding protein; Identified by match to protein family HMM PF00496.	0.909
AHA_2001	AHA_3093	AHA_2001	AHA_3093	Periplasmic murein peptide-binding protein; Identified by match to protein family HMM PF00496.	Peptide ABC transporter, periplasmic peptide-binding protein; Identified by match to protein family HMM PF00496.	0.450
AHA_2001	AHA_3094	AHA_2001	AHA_3094	Periplasmic murein peptide-binding protein; Identified by match to protein family HMM PF00496.	Peptide ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.666
AHA_2001	AHA_3095	AHA_2001	AHA_3095	Periplasmic murein peptide-binding protein; Identified by match to protein family HMM PF00496.	Chitooligosaccharide transport system permease protein; Identified by match to protein family HMM PF00528.	0.593
AHA_2001	AHA_3096	AHA_2001	AHA_3096	Periplasmic murein peptide-binding protein; Identified by match to protein family HMM PF00496.	Peptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	0.626
AHA_2001	AHA_3097	AHA_2001	AHA_3097	Periplasmic murein peptide-binding protein; Identified by match to protein family HMM PF00496.	Oligopeptide transport ATP-binding protein AppF; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	0.602
AHA_2001	AHA_3322	AHA_2001	AHA_3322	Periplasmic murein peptide-binding protein; Identified by match to protein family HMM PF00496.	Dipeptide transport system permease protein DppC; Identified by match to protein family HMM PF00528.	0.545
AHA_2001	AHA_3323	AHA_2001	AHA_3323	Periplasmic murein peptide-binding protein; Identified by match to protein family HMM PF00496.	Dipeptide transport system permease protein DppB; Identified by match to protein family HMM PF00528.	0.544
AHA_2001	AHA_3324	AHA_2001	AHA_3324	Periplasmic murein peptide-binding protein; Identified by match to protein family HMM PF00496.	Peptide ABC transporter, periplasmic peptide-binding protein; Identified by match to protein family HMM PF00496.	0.434
AHA_2001	AHA_3325	AHA_2001	AHA_3325	Periplasmic murein peptide-binding protein; Identified by match to protein family HMM PF00496.	Dipeptide transport ATP-binding protein DppD; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	0.444
AHA_2001	AHA_3428	AHA_2001	AHA_3428	Periplasmic murein peptide-binding protein; Identified by match to protein family HMM PF00496.	Oligopeptide transport ATP-binding protein AppF; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	0.716
AHA_2001	AHA_3429	AHA_2001	AHA_3429	Periplasmic murein peptide-binding protein; Identified by match to protein family HMM PF00496.	Oligopeptide transport ATP-binding protein OppD; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	0.658
AHA_2001	AHA_3658	AHA_2001	AHA_3658	Periplasmic murein peptide-binding protein; Identified by match to protein family HMM PF00496.	Periplasmic murein peptide-binding protein; Identified by match to protein family HMM PF00496.	0.905

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