STRINGSTRING
Sare_2042 Sare_2042 Sare_2043 Sare_2043 Sare_2939 Sare_2939 Sare_2940 Sare_2940 Sare_4004 Sare_4004 Sare_4005 Sare_4005 Sare_4548 Sare_4548 Sare_4549 Sare_4549 Sare_4550 Sare_4550 Sare_4551 Sare_4551 Sare_4870 Sare_4870 Sare_4871 Sare_4871 Sare_4872 Sare_4872 Sare_4873 Sare_4873 Sare_4874 Sare_4874 Sare_4875 Sare_4875
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sare_2042KEGG: sco:SCO3824 putative ABC-transporter ATP-binding component; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase. (328 aa)
Sare_2043PFAM: ABC-2 type transporter; KEGG: sco:SCO3825 putative ABC-transporter transmembrane component. (279 aa)
Sare_2939PFAM: ABC-2 type transporter; KEGG: sco:SCO3825 putative ABC-transporter transmembrane component. (286 aa)
Sare_2940KEGG: sco:SCO3824 putative ABC-transporter ATP-binding component; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase. (335 aa)
Sare_4004PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: stp:Strop_3622 ABC transporter related. (282 aa)
Sare_4005PFAM: ABC-2 type transporter; KEGG: stp:Strop_3623 ABC-2 type transporter. (280 aa)
Sare_4548KEGG: kra:Krad_2435 hypothetical protein. (214 aa)
Sare_4549PFAM: Phosphoglycerate mutase; KEGG: sen:SACE_5412 phosphoglycerate mutase. (200 aa)
Sare_4550KEGG: sen:SACE_0424 probable ABC transporter, ATP-binding component; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase. (314 aa)
Sare_4551PFAM: ABC-2 type transporter; KEGG: sen:SACE_0423 multidrug ABC transporter permease. (264 aa)
Sare_4870KEGG: stp:Strop_4379 hypothetical protein. (173 aa)
Sare_4871PFAM: protein of unknown function DUF1023; KEGG: stp:Strop_4380 protein of unknown function DUF1023. (554 aa)
Sare_4872KEGG: stp:Strop_4381 hypothetical protein. (106 aa)
Sare_4873Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; KEGG: stp:Strop_4382 regulatory protein, MerR. (260 aa)
Sare_4874PFAM: ABC-2 type transporter; KEGG: stp:Strop_4383 ABC-2 type transporter. (253 aa)
Sare_4875PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: stp:Strop_4384 ABC transporter related. (279 aa)
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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