STRINGSTRING
ligA ligA EDQ05216.1 EDQ05216.1 EDQ06911.1 EDQ06911.1 EDQ06883.1 EDQ06883.1 EDQ06664.1 EDQ06664.1 EDQ04801.1 EDQ04801.1 EDQ06641.1 EDQ06641.1 mutM mutM EDQ03862.1 EDQ03862.1 EDQ04294.1 EDQ04294.1 ung ung EDQ04797.1 EDQ04797.1 EDQ03682.1 EDQ03682.1 EDQ03683.1 EDQ03683.1 EDQ03939.1 EDQ03939.1 EDQ03960.1 EDQ03960.1 EDQ05435.1 EDQ05435.1 polA polA nth nth
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ligADNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily. (685 aa)
EDQ05216.1single-stranded-DNA-specific exonuclease RecJ; COG0608 Single-stranded DNA-specific exonuclease. (579 aa)
EDQ06911.1COG2818 3-methyladenine DNA glycosylase. (189 aa)
EDQ06883.1uracil-DNA glycosylase, C-terminal; COG1573 Uracil-DNA glycosylase. (254 aa)
EDQ06664.1COG0708 Exonuclease III. (262 aa)
EDQ04801.1DNA-3-methyladenine glycosylase II, putative; COG0122 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase. (215 aa)
EDQ06641.1A/G-specific adenine glycosylase, putative; Adenine glycosylase active on G-A mispairs. (354 aa)
mutMformamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. (283 aa)
EDQ03862.1Hypothetical protein. (91 aa)
EDQ04294.1uracil-DNA glycosylase, putative; COG1573 Uracil-DNA glycosylase. (476 aa)
unguracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. (219 aa)
EDQ04797.1Exodeoxyribonuclease III, putative; COG0708 Exonuclease III. (260 aa)
EDQ03682.1Hypothetical protein; COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing. (334 aa)
EDQ03683.1COG1793 ATP-dependent DNA ligase. (532 aa)
EDQ03939.1COG0350 Methylated DNA-protein cysteine methyltransferase. (151 aa)
EDQ03960.1uracil-DNA glycosylase, putative; COG1573 Uracil-DNA glycosylase. (215 aa)
EDQ05435.1Metallo-beta-lactamase family protein; COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing. (464 aa)
polADNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (932 aa)
nthEndonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (214 aa)
Your Current Organism:
Sulfitobacter indolifex
NCBI taxonomy Id: 391624
Other names: Oceanibulbus indolifex HEL-45, S. indolifex HEL-45, Sulfitobacter indolifex HEL-45
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