STRINGSTRING
Ccel_0398 Ccel_0398 Ccel_0399 Ccel_0399 Ccel_0400 Ccel_0400 Ccel_0401 Ccel_0401 Ccel_3099 Ccel_3099 Ccel_3361 Ccel_3361
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ccel_0398Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: cth:Cthe_2898 anti-sigma-factor antagonist. (105 aa)
Ccel_0399KEGG: cth:Cthe_2899 putative anti-sigma regulatory factor, serine/threonine protein kinase. (128 aa)
Ccel_0400TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor, sigma-B/F/G subfamily; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: cth:Cthe_2900 RNA polymerase, sigma 28 subunit. (249 aa)
Ccel_0401KEGG: cth:Cthe_2901 putative anti-sigma regulatory factor, serine/threonine protein kinase. (144 aa)
Ccel_3099KEGG: cth:Cthe_2622 hypothetical protein. (129 aa)
Ccel_3361KEGG: cth:Cthe_2166 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein. (373 aa)
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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