(5 nodes) Mixed, incl. Stress up-regulated Nod 19, and F-box associated domain, type 3 network (Ricinus communis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RCOM_1503160	Uncharacterized protein. (463 aa)
	TPS8	Probable terpene synthase 8; Probable sesquiterpene synthase; Belongs to the terpene synthase family. (551 aa)
	RCOM_0690370	F-box domain-containing protein. (358 aa)
	RCOM_0986600	Uncharacterized protein. (198 aa)
	RCOM_2082130	Uncharacterized protein. (109 aa)

Your Current Organism:

Ricinus communis

NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RCOM_0690370	RCOM_0986600	B9S4H9	B9SY43	F-box domain-containing protein.	Uncharacterized protein.	0.567
RCOM_0690370	RCOM_1503160	B9S4H9	B9RA48	F-box domain-containing protein.	Uncharacterized protein.	0.476
RCOM_0690370	RCOM_2082130	B9S4H9	B9TIL6	F-box domain-containing protein.	Uncharacterized protein.	0.507
RCOM_0690370	TPS8	B9S4H9	B9S1N2	F-box domain-containing protein.	Probable terpene synthase 8; Probable sesquiterpene synthase; Belongs to the terpene synthase family.	0.495
RCOM_0986600	RCOM_0690370	B9SY43	B9S4H9	Uncharacterized protein.	F-box domain-containing protein.	0.567
RCOM_0986600	RCOM_1503160	B9SY43	B9RA48	Uncharacterized protein.	Uncharacterized protein.	0.484
RCOM_0986600	RCOM_2082130	B9SY43	B9TIL6	Uncharacterized protein.	Uncharacterized protein.	0.454
RCOM_0986600	TPS8	B9SY43	B9S1N2	Uncharacterized protein.	Probable terpene synthase 8; Probable sesquiterpene synthase; Belongs to the terpene synthase family.	0.530
RCOM_1503160	RCOM_0690370	B9RA48	B9S4H9	Uncharacterized protein.	F-box domain-containing protein.	0.476
RCOM_1503160	RCOM_0986600	B9RA48	B9SY43	Uncharacterized protein.	Uncharacterized protein.	0.484
RCOM_1503160	RCOM_2082130	B9RA48	B9TIL6	Uncharacterized protein.	Uncharacterized protein.	0.506
RCOM_1503160	TPS8	B9RA48	B9S1N2	Uncharacterized protein.	Probable terpene synthase 8; Probable sesquiterpene synthase; Belongs to the terpene synthase family.	0.466
RCOM_2082130	RCOM_0690370	B9TIL6	B9S4H9	Uncharacterized protein.	F-box domain-containing protein.	0.507
RCOM_2082130	RCOM_0986600	B9TIL6	B9SY43	Uncharacterized protein.	Uncharacterized protein.	0.454
RCOM_2082130	RCOM_1503160	B9TIL6	B9RA48	Uncharacterized protein.	Uncharacterized protein.	0.506
RCOM_2082130	TPS8	B9TIL6	B9S1N2	Uncharacterized protein.	Probable terpene synthase 8; Probable sesquiterpene synthase; Belongs to the terpene synthase family.	0.405
TPS8	RCOM_0690370	B9S1N2	B9S4H9	Probable terpene synthase 8; Probable sesquiterpene synthase; Belongs to the terpene synthase family.	F-box domain-containing protein.	0.495
TPS8	RCOM_0986600	B9S1N2	B9SY43	Probable terpene synthase 8; Probable sesquiterpene synthase; Belongs to the terpene synthase family.	Uncharacterized protein.	0.530
TPS8	RCOM_1503160	B9S1N2	B9RA48	Probable terpene synthase 8; Probable sesquiterpene synthase; Belongs to the terpene synthase family.	Uncharacterized protein.	0.466
TPS8	RCOM_2082130	B9S1N2	B9TIL6	Probable terpene synthase 8; Probable sesquiterpene synthase; Belongs to the terpene synthase family.	Uncharacterized protein.	0.405