STRINGSTRING
RCOM_1070440 RCOM_1070440 RCOM_1712580 RCOM_1712580 RCOM_0487950 RCOM_0487950 RCOM_0703820 RCOM_0703820 RCOM_0704510 RCOM_0704510 RCOM_1597380 RCOM_1597380 RCOM_1602530 RCOM_1602530 RCOM_1602680 RCOM_1602680 RCOM_1503040 RCOM_1503040 RCOM_1510750 RCOM_1510750 RCOM_1674150 RCOM_1674150 RCOM_1609680 RCOM_1609680 RCOM_1611990 RCOM_1611990 RCOM_1612650 RCOM_1612650 RCOM_1428570 RCOM_1428570 RCOM_1433350 RCOM_1433350 RCOM_1434540 RCOM_1434540 FEN1 FEN1 RCOM_1437420 RCOM_1437420 RCOM_1442990 RCOM_1442990 RCOM_1447650 RCOM_1447650 RCOM_1447670 RCOM_1447670 RCOM_1447980 RCOM_1447980 RCOM_1576440 RCOM_1576440 RCOM_1576470 RCOM_1576470 RCOM_1578700 RCOM_1578700 RCOM_1579070 RCOM_1579070 RCOM_1031510 RCOM_1031510 RCOM_0921770 RCOM_0921770 RCOM_0926520 RCOM_0926520 RCOM_1539780 RCOM_1539780 LSM1 LSM1 RCOM_0799080 RCOM_0799080 RCOM_1243340 RCOM_1243340 RCOM_0911510 RCOM_0911510 RCOM_1176920 RCOM_1176920 RCOM_0905310 RCOM_0905310 RCOM_0935770 RCOM_0935770 RCOM_1537410 RCOM_1537410 RCOM_0867840 RCOM_0867840 RCOM_1323640 RCOM_1323640 RCOM_1325080 RCOM_1325080 RCOM_0698990 RCOM_0698990 RCOM_0730930 RCOM_0730930 RCOM_0732550 RCOM_0732550 RCOM_0673440 RCOM_0673440 RCOM_0556860 RCOM_0556860 RCOM_0807900 RCOM_0807900 RCOM_0993080 RCOM_0993080 RCOM_1063350 RCOM_1063350 RCOM_0875030 RCOM_0875030 RCOM_2111750 RCOM_2111750 RCOM_1906590 RCOM_1906590 RCOM_1900660 RCOM_1900660 RCOM_2148830 RCOM_2148830 RCOM_1840220 RCOM_1840220 RCOM_2143920 RCOM_2143920 RCOM_0151030 RCOM_0151030 RCOM_0444530 RCOM_0444530 RCOM_0026480 RCOM_0026480 LSM1-2 LSM1-2 LSM3 LSM3 RCOM_0374000 RCOM_0374000 RCOM_0272140 RCOM_0272140 RCOM_0645430 RCOM_0645430 RCOM_0041430 RCOM_0041430 RCOM_0063290 RCOM_0063290 RCOM_0017370 RCOM_0017370 RCOM_1259240 RCOM_1259240 RCOM_0490080 RCOM_0490080 RCOM_0327460 RCOM_0327460 RCOM_0347880 RCOM_0347880 RCOM_0225810 RCOM_0225810 RCOM_0033810 RCOM_0033810 RCOM_1320220 RCOM_1320220 RCOM_0520190 RCOM_0520190 RCOM_1412310 RCOM_1412310 RCOM_1411970 RCOM_1411970 RCOM_0979860 RCOM_0979860 RCOM_0496650 RCOM_0496650 RCOM_1150230 RCOM_1150230 RCOM_0312580 RCOM_0312580 RCOM_0470900 RCOM_0470900 RCOM_0296620 RCOM_0296620 RCOM_0658040 RCOM_0658040 RCOM_0758300 RCOM_0758300 RCOM_1478200 RCOM_1478200 RCOM_0597110 RCOM_0597110 RCOM_1321750 RCOM_1321750 RCOM_1321070 RCOM_1321070 RCOM_1121820 RCOM_1121820 RCOM_0647920 RCOM_0647920 RCOM_0647870 RCOM_0647870 RCOM_1095710 RCOM_1095710 RCOM_1212030 RCOM_1212030 RCOM_1211160 RCOM_1211160 RCOM_0610380 RCOM_0610380 RCOM_0836480 RCOM_0836480 RCOM_0836490 RCOM_0836490 RCOM_0586990 RCOM_0586990 RCOM_0726500 RCOM_0726500 LSM4 LSM4 RCOM_0474930 RCOM_0474930 RCOM_1282050 RCOM_1282050 RCOM_1282470 RCOM_1282470 RCOM_1282650 RCOM_1282650
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RCOM_1070440Regulator of nonsense transcripts, putative. (824 aa)
RCOM_1712580Uncharacterized protein. (90 aa)
RCOM_04879503'-5' exonuclease, putative. (977 aa)
RCOM_0703820ATP-dependent RNA and DNA helicase, putative. (820 aa)
RCOM_0704510Protein binding protein, putative. (665 aa)
RCOM_15973805'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. (1113 aa)
RCOM_1602530O-linked n-acetylglucosamine transferase, ogt, putative. (1236 aa)
RCOM_1602680Smg4_UPF3 domain-containing protein. (423 aa)
RCOM_1503040Ribonuclease; Cytoprotective ribonuclease (RNase) required for resistance to abiotic stresses, acting as a positive regulator of mRNA decapping during stress. (988 aa)
RCOM_1510750Exosome complex exonuclease RRP40, putative. (234 aa)
RCOM_1674150Smg-7, putative. (1008 aa)
RCOM_1609680Ccr4-not transcription complex, putative. (2330 aa)
RCOM_1611990Uncharacterized protein; Belongs to the RNase T2 family. (88 aa)
RCOM_1612650Poly(A) polymerase cid, putative. (696 aa)
RCOM_14285705'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. Acts as an endogenous post-transcriptional gene silencing (PTGS) suppressor. (964 aa)
RCOM_1433350Uncharacterized protein. (107 aa)
RCOM_14345403-5 exonuclease, putative. (570 aa)
FEN1Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (345 aa)
RCOM_1437420Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (378 aa)
RCOM_1442990Dead box ATP-dependent RNA helicase, putative; Belongs to the DEAD box helicase family. (540 aa)
RCOM_1447650Ribonuclease t2, putative; Belongs to the RNase T2 family. (237 aa)
RCOM_1447670Ribonuclease t2, putative; Belongs to the RNase T2 family. (257 aa)
RCOM_1447980Splicing factor U2AF-associated protein, putative. (518 aa)
RCOM_1576440Uncharacterized protein. (809 aa)
RCOM_1576470Uncharacterized protein. (777 aa)
RCOM_1578700Polyadenylate-binding protein, putative. (199 aa)
RCOM_1579070Cap binding protein, putative. (824 aa)
RCOM_1031510DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. (1099 aa)
RCOM_0921770Ccr4-associated factor, putative. (274 aa)
RCOM_0926520Btz domain-containing protein. (408 aa)
RCOM_1539780Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. (299 aa)
LSM1U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (128 aa)
RCOM_0799080Exosome complex exonuclease RRP46, putative. (211 aa)
RCOM_1243340Protein dom-3, putative. (528 aa)
RCOM_0911510ATP-dependent RNA and DNA helicase, putative. (547 aa)
RCOM_1176920Uncharacterized protein. (373 aa)
RCOM_0905310Adenosine deaminase, putative. (364 aa)
RCOM_0935770Double-stranded RNA binding protein, putative. (978 aa)
RCOM_1537410Lupus la ribonucleoprotein, putative. (867 aa)
RCOM_0867840Uncharacterized protein. (600 aa)
RCOM_13236405'->3' exoribonuclease, putative. (1545 aa)
RCOM_1325080Uncharacterized protein. (380 aa)
RCOM_0698990Uncharacterized protein. (453 aa)
RCOM_0730930Helicase, putative. (1335 aa)
RCOM_0732550DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative. (176 aa)
RCOM_0673440Uncharacterized protein. (739 aa)
RCOM_0556860RNA binding protein, putative. (436 aa)
RCOM_0807900Dead box ATP-dependent RNA helicase, putative. (407 aa)
RCOM_0993080Ccr4-associated factor, putative. (161 aa)
RCOM_1063350Dead box ATP-dependent RNA helicase, putative; Belongs to the DEAD box helicase family. (781 aa)
RCOM_0875030Mitotic control protein dis3, putative; Belongs to the RNR ribonuclease family. (934 aa)
RCOM_2111750ATP-dependent RNA and DNA helicase, putative. (272 aa)
RCOM_1906590Lipid-A-disaccharide synthase, putative. (219 aa)
RCOM_1900660ATP-dependent RNA and DNA helicase, putative. (427 aa)
RCOM_2148830Dead box ATP-dependent RNA helicase, putative. (184 aa)
RCOM_1840220ATP-dependent RNA and DNA helicase, putative. (404 aa)
RCOM_2143920Dead box ATP-dependent RNA helicase, putative. (135 aa)
RCOM_0151030Small nuclear ribonucleoprotein f, putative. (91 aa)
RCOM_0444530Ccr4-associated factor, putative. (294 aa)
RCOM_0026480Nudix hydrolase domain-containing protein. (316 aa)
LSM1-2U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (128 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
RCOM_0374000Exosome complex exonuclease rrp43, putative. (303 aa)
RCOM_0272140Uncharacterized protein. (851 aa)
RCOM_0645430Helicase, putative. (962 aa)
RCOM_0041430Carbon catabolite repressor protein, putative. (603 aa)
RCOM_0063290Exosome complex exonuclease rrp45, putative. (463 aa)
RCOM_0017370Fe2OG dioxygenase domain-containing protein. (511 aa)
RCOM_1259240Uncharacterized protein. (366 aa)
RCOM_0490080Exosome complex exonuclease RRP41, putative. (241 aa)
RCOM_0327460CCR4-NOT transcription complex subunit, putative. (664 aa)
RCOM_0347880Exosome complex exonuclease rrp42, putative. (287 aa)
RCOM_0225810Ccr4-associated factor, putative. (292 aa)
RCOM_0033810Exosome complex exonuclease RRP41, putative. (180 aa)
RCOM_1320220Uncharacterized protein. (172 aa)
RCOM_0520190Nonsense-mediated mRNA decay protein, putative. (1280 aa)
RCOM_1412310Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (182 aa)
RCOM_1411970Mago-bind domain-containing protein. (252 aa)
RCOM_0979860Btz domain-containing protein. (683 aa)
RCOM_0496650Helicase, putative. (991 aa)
RCOM_1150230Uncharacterized protein. (697 aa)
RCOM_0312580Dead box ATP-dependent RNA helicase, putative; Belongs to the DEAD box helicase family. (505 aa)
RCOM_0470900Ccr4-associated factor, putative. (274 aa)
RCOM_0296620Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (657 aa)
RCOM_0658040Protein mago nashi, putative. (77 aa)
RCOM_0758300Smg4_UPF3 domain-containing protein. (472 aa)
RCOM_1478200Smg-7, putative. (982 aa)
RCOM_0597110Uncharacterized protein. (576 aa)
RCOM_13217503'-5' exonuclease, putative. (857 aa)
RCOM_1321070Polyribonucleotide nucleotidyltransferase, putative. (948 aa)
RCOM_1121820Uncharacterized protein. (889 aa)
RCOM_0647920Uncharacterized protein. (550 aa)
RCOM_0647870Rrp4, putative. (322 aa)
RCOM_1095710Polyribonucleotide nucleotidyltransferase, putative. (958 aa)
RCOM_1212030Ribonuclease t2, putative; Belongs to the RNase T2 family. (259 aa)
RCOM_1211160Ribonuclease t2, putative; Belongs to the RNase T2 family. (138 aa)
RCOM_0610380DNA-directed RNA polymerase II, putative. (138 aa)
RCOM_0836480Ribonuclease t2, putative; Belongs to the RNase T2 family. (226 aa)
RCOM_0836490Ribonuclease t2, putative; Belongs to the RNase T2 family. (226 aa)
RCOM_0586990DUF4477 domain-containing protein. (394 aa)
RCOM_0726500Dead box ATP-dependent RNA helicase, putative. (956 aa)
LSM4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (147 aa)
RCOM_0474930Uncharacterized protein. (1233 aa)
RCOM_1282050mRNA decapping enzyme 1A, putative. (210 aa)
RCOM_1282470Ccr4-associated factor, putative. (281 aa)
RCOM_12826505'->3' exoribonuclease, putative. (993 aa)
Your Current Organism:
Ricinus communis
NCBI taxonomy Id: 3988
Other names: R. communis, Ricinus communis L., Ricinus sanguineus, Ricinus sanguineus hort. ex Groenl., castor bean
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