STRINGSTRING
hcp-1 hcp-1 Gbem_1150 Gbem_1150 hcp-2 hcp-2 hcp-3 hcp-3 glnK glnK amtB amtB Gbem_1731 Gbem_1731 nrfA-1 nrfA-1 nifH nifH nifD nifD nifK nifK nifEN nifEN nifX nifX fdxN fdxN nifB nifB draT draT draG draG Gbem_2083 Gbem_2083 nrfA-2 nrfA-2 Gbem_2946 Gbem_2946 glnB glnB Gbem_3126 Gbem_3126 gnfR gnfR Gbem_3667 Gbem_3667
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
hcp-1Iron-sulfur-oxygen hybrid cluster protein (prismane); Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O. (568 aa)
Gbem_1150Hypothetical protein. (252 aa)
hcp-2Iron-sulfur-oxygen hybrid cluster protein (prismane); Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O. (552 aa)
hcp-3Iron-sulfur-oxygen hybrid cluster protein (prismane); Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O. (549 aa)
glnKNitrogen regulatory protein P-II; Belongs to the P(II) protein family. (112 aa)
amtBAmmonium transporter. (515 aa)
Gbem_1731Iron-sulfur cluster-binding ATPase, NifH/FrxC family. (274 aa)
nrfA-1Cytochrome c nitrite and sulfite reductase, catalytic subunit lipoprotein; 5 heme-binding sites; Belongs to the cytochrome c-552 family. (492 aa)
nifHNitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family. (289 aa)
nifDNitrogenase molybdenum-iron protein, alpha chain. (487 aa)
nifKNitrogenase molybdenum-iron protein, beta chain; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation; Belongs to the NifD/NifK/NifE/NifN family. (487 aa)
nifENNitrogenase molybdenum-iron cofactor biosynthesis protein NifEN; Belongs to the NifD/NifK/NifE/NifN family. (918 aa)
nifXNitrogenase molybdenum-iron cofactor biosynthesis protein NifX. (129 aa)
fdxNNitrogenase-associated ferredoxin. (87 aa)
nifBNitrogenase molybdenum-iron cofactor biosynthesis protein NifB. (109 aa)
draTNAD(+)--nitrogenase ADP-D-ribosyltransferase. (262 aa)
draGADP-ribosyl-(nitrogenase)-activating glycohydrolase. (301 aa)
Gbem_2083Nitrogen fixation protein NifB; Nitrogenase molybdenum-iron cofactor biosynthesis radical SAM domain iron-sulfur cluster-binding oxidoreductase. (285 aa)
nrfA-2Cytochrome c nitrite and sulfite reductase; Catalytic subunit lipoprotein, 5 heme-binding sites; Belongs to the cytochrome c-552 family. (483 aa)
Gbem_2946Cytochrome c nitrite reductase; 8 heme-binding sites; Belongs to the cytochrome c-552 family. (538 aa)
glnBNitrogen regulatory protein P-II; Belongs to the P(II) protein family. (112 aa)
Gbem_3126Ammonium transporter, putative. (406 aa)
gnfRNitrogen fixation transcript antitermination response regulator, ANTAR domain-containing; Domains: REC, ANTAR. (191 aa)
Gbem_3667Cytochrome c; 8 heme-binding sites. (407 aa)
Your Current Organism:
Geobacter bemidjiensis
NCBI taxonomy Id: 404380
Other names: G. bemidjiensis Bem, Geobacter bemidjiensis Bem, Geobacter bemidjiensis str. Bem, Geobacter bemidjiensis strain Bem
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