(45 nodes) alpha-Linolenic acid metabolism network (Trichoderma virens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G9MVD2_HYPVG	SGL domain-containing protein. (355 aa)
	G9MV33_HYPVG	PKS_ER domain-containing protein. (334 aa)
	G9MV20_HYPVG	SGL domain-containing protein. (333 aa)
	G9MSI2_HYPVG	Uncharacterized protein. (167 aa)
	G9MS53_HYPVG	PKS_ER domain-containing protein. (342 aa)
	G9MQN0_HYPVG	Oxidored_FMN domain-containing protein. (411 aa)
	G9MP18_HYPVG	Uncharacterized protein. (920 aa)
	G9MMH2_HYPVG	Oxidored_FMN domain-containing protein. (457 aa)
	G9MJV1_HYPVG	PKS_ER domain-containing protein. (339 aa)
	G9MIP6_HYPVG	PKS_ER domain-containing protein. (365 aa)
	G9MIM7_HYPVG	Uncharacterized protein. (1161 aa)
	G9MI09_HYPVG	Oxidored_FMN domain-containing protein. (416 aa)
	G9MI02_HYPVG	Lipase_3 domain-containing protein. (378 aa)
	G9MI01_HYPVG	Uncharacterized protein. (163 aa)
	G9MHG5_HYPVG	PNPLA domain-containing protein. (383 aa)
	G9MGZ5_HYPVG	Uncharacterized protein. (340 aa)
	G9MGW1_HYPVG	PKS_ER domain-containing protein. (394 aa)
	G9MGH4_HYPVG	Uncharacterized protein. (376 aa)
	G9MGA7_HYPVG	PNPLA domain-containing protein. (364 aa)
	G9MFG9_HYPVG	PKS_ER domain-containing protein. (335 aa)
	G9MF24_HYPVG	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (414 aa)
	G9MEL8_HYPVG	JmjC domain-containing protein. (303 aa)
	G9MSJ4_HYPVG	Uncharacterized protein. (368 aa)
	G9ND58_HYPVG	Patatin-like phospholipase domain-containing protein; Lipid hydrolase; Belongs to the PLPL family. (764 aa)
	G9NCK7_HYPVG	Uncharacterized protein. (1474 aa)
	G9N7D1_HYPVG	PKS_ER domain-containing protein. (323 aa)
	G9N791_HYPVG	Uncharacterized protein. (826 aa)
	G9N678_HYPVG	PKS_ER domain-containing protein. (333 aa)
	G9N633_HYPVG	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (419 aa)
	G9N5J2_HYPVG	PKS_ER domain-containing protein. (340 aa)
	G9N5G9_HYPVG	PKS_ER domain-containing protein. (349 aa)
	G9N4V9_HYPVG	PKS_ER domain-containing protein. (319 aa)
	G9N4B7_HYPVG	PKS_ER domain-containing protein. (360 aa)
	G9N353_HYPVG	Uncharacterized protein. (1207 aa)
	G9N2M4_HYPVG	PNPLA domain-containing protein. (586 aa)
	G9N178_HYPVG	Uncharacterized protein. (331 aa)
	G9N101_HYPVG	PKS_ER domain-containing protein. (342 aa)
	G9N0P9_HYPVG	Oxidored_FMN domain-containing protein. (454 aa)
	G9N0L4_HYPVG	PKS_ER domain-containing protein. (355 aa)
	G9MYV0_HYPVG	Lysophospholipase. (815 aa)
	G9MYJ4_HYPVG	PKS_ER domain-containing protein. (320 aa)
	G9MY51_HYPVG	Uncharacterized protein. (346 aa)
	G9MY12_HYPVG	PKS_ER domain-containing protein. (336 aa)
	G9MXL1_HYPVG	SGL domain-containing protein. (319 aa)
	G9MVY0_HYPVG	Uncharacterized protein. (154 aa)

Your Current Organism:

Trichoderma virens

NCBI taxonomy Id: 413071
Other names: T. virens Gv29-8, Trichoderma virens Gv29-8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G9MF24_HYPVG	G9MP18_HYPVG	G9MF24	G9MP18	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.891
G9MF24_HYPVG	G9MSI2_HYPVG	G9MF24	G9MSI2	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.879
G9MF24_HYPVG	G9MVY0_HYPVG	G9MF24	G9MVY0	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.814
G9MF24_HYPVG	G9N633_HYPVG	G9MF24	G9N633	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.890
G9MGA7_HYPVG	G9MIM7_HYPVG	G9MGA7	G9MIM7	PNPLA domain-containing protein.	Uncharacterized protein.	0.512
G9MGA7_HYPVG	G9MYV0_HYPVG	G9MGA7	G9MYV0	PNPLA domain-containing protein.	Lysophospholipase.	0.511
G9MGA7_HYPVG	G9N353_HYPVG	G9MGA7	G9N353	PNPLA domain-containing protein.	Uncharacterized protein.	0.512
G9MGA7_HYPVG	G9NCK7_HYPVG	G9MGA7	G9NCK7	PNPLA domain-containing protein.	Uncharacterized protein.	0.512
G9MHG5_HYPVG	G9MIM7_HYPVG	G9MHG5	G9MIM7	PNPLA domain-containing protein.	Uncharacterized protein.	0.512
G9MHG5_HYPVG	G9MYV0_HYPVG	G9MHG5	G9MYV0	PNPLA domain-containing protein.	Lysophospholipase.	0.511
G9MHG5_HYPVG	G9N353_HYPVG	G9MHG5	G9N353	PNPLA domain-containing protein.	Uncharacterized protein.	0.512
G9MHG5_HYPVG	G9NCK7_HYPVG	G9MHG5	G9NCK7	PNPLA domain-containing protein.	Uncharacterized protein.	0.512
G9MIM7_HYPVG	G9MGA7_HYPVG	G9MIM7	G9MGA7	Uncharacterized protein.	PNPLA domain-containing protein.	0.512
G9MIM7_HYPVG	G9MHG5_HYPVG	G9MIM7	G9MHG5	Uncharacterized protein.	PNPLA domain-containing protein.	0.512
G9MIM7_HYPVG	G9N791_HYPVG	G9MIM7	G9N791	Uncharacterized protein.	Uncharacterized protein.	0.410
G9MIP6_HYPVG	G9N4V9_HYPVG	G9MIP6	G9N4V9	PKS_ER domain-containing protein.	PKS_ER domain-containing protein.	0.417
G9MJV1_HYPVG	G9N5G9_HYPVG	G9MJV1	G9N5G9	PKS_ER domain-containing protein.	PKS_ER domain-containing protein.	0.424
G9MP18_HYPVG	G9MF24_HYPVG	G9MP18	G9MF24	Uncharacterized protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.891
G9MP18_HYPVG	G9MSI2_HYPVG	G9MP18	G9MSI2	Uncharacterized protein.	Uncharacterized protein.	0.890
G9MP18_HYPVG	G9MVY0_HYPVG	G9MP18	G9MVY0	Uncharacterized protein.	Uncharacterized protein.	0.814