(29 nodes) SAGA-type complex network (Phoenix dactylifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103723189	Probable transcription-associated protein 1. (386 aa)
	LOC113463643	Transcription-associated protein 1-like. (534 aa)
	LOC103721031	Transformation/transcription domain-associated protein-like; Belongs to the PI3/PI4-kinase family. (2910 aa)
	LOC103713576	Transcription initiation factor TFIID subunit 6-like. (429 aa)
	LOC103708037	Aluminum-activated malate transporter 2-like. (440 aa)
	LOC103707073	Uncharacterized protein LOC103707073. (406 aa)
	LOC103706479	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family. (609 aa)
	LOC103709216	Uncharacterized protein LOC103709216. (357 aa)
	LOC103701524	Uncharacterized protein LOC103701524. (420 aa)
	LOC103721858	Aluminum-activated malate transporter 10-like. (478 aa)
	LOC103721523	Uncharacterized protein LOC103721523. (428 aa)
	LOC103719482	Aluminum-activated malate transporter 10-like. (432 aa)
	LOC103718537	Aluminum-activated malate transporter 9-like. (533 aa)
	LOC103717559	SAGA-associated factor 29 homolog A-like. (267 aa)
	LOC103716004	Aluminum-activated malate transporter 9-like. (529 aa)
	LOC103715641	Uncharacterized protein LOC103715641. (425 aa)
	LOC103715895	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family. (606 aa)
	LOC103714818	Protein PHYTOCHROME-DEPENDENT LATE-FLOWERING-like isoform X1. (1305 aa)
	LOC103714290	Aluminum-activated malate transporter 1-like. (451 aa)
	LOC103710945	LOW QUALITY PROTEIN: transformation/transcription domain-associated protein-like; Belongs to the PI3/PI4-kinase family. (3913 aa)
	LOC103710115	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family. (609 aa)
	LOC103707255	Ubiquitin carboxyl-terminal hydrolase 22. (526 aa)
	LOC103704400	Aluminum-activated malate transporter 1-like. (452 aa)
	LOC103704133	Transcription initiation factor TFIID subunit 12b isoform X1. (601 aa)
	LOC103702361	Protein PHYTOCHROME-DEPENDENT LATE-FLOWERING-like. (1318 aa)
	LOC103702412	Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family. (133 aa)
	LOC103702003	Transcription initiation factor TFIID subunit 9. (204 aa)
	LOC103700816	Uncharacterized protein LOC103700816. (357 aa)
	LOC103697462	Transcription initiation factor TFIID subunit 12b-like isoform X1. (623 aa)

Your Current Organism:

Phoenix dactylifera

NCBI taxonomy Id: 42345
Other names: P. dactylifera, Phoenix dactylifera L., date palm

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103697462	LOC103700816	A0A2H3X2Z7	A0A2H3XAP4	Transcription initiation factor TFIID subunit 12b-like isoform X1.	Uncharacterized protein LOC103700816.	0.541
LOC103697462	LOC103702003	A0A2H3X2Z7	A0A2H3XE65	Transcription initiation factor TFIID subunit 12b-like isoform X1.	Transcription initiation factor TFIID subunit 9.	0.979
LOC103697462	LOC103702412	A0A2H3X2Z7	A0A2H3XFL7	Transcription initiation factor TFIID subunit 12b-like isoform X1.	Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family.	0.976
LOC103697462	LOC103704133	A0A2H3X2Z7	A0A2H3XLJ3	Transcription initiation factor TFIID subunit 12b-like isoform X1.	Transcription initiation factor TFIID subunit 12b isoform X1.	0.901
LOC103697462	LOC103704400	A0A2H3X2Z7	A0A2H3XMM5	Transcription initiation factor TFIID subunit 12b-like isoform X1.	Aluminum-activated malate transporter 1-like.	0.541
LOC103697462	LOC103706479	A0A2H3X2Z7	A0A3Q0I031	Transcription initiation factor TFIID subunit 12b-like isoform X1.	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	0.789
LOC103697462	LOC103707255	A0A2H3X2Z7	A0A2H3XWW4	Transcription initiation factor TFIID subunit 12b-like isoform X1.	Ubiquitin carboxyl-terminal hydrolase 22.	0.789
LOC103697462	LOC103708037	A0A2H3X2Z7	A0A3Q0I1P2	Transcription initiation factor TFIID subunit 12b-like isoform X1.	Aluminum-activated malate transporter 2-like.	0.541
LOC103697462	LOC103709216	A0A2H3X2Z7	A0A2H3ZRT2	Transcription initiation factor TFIID subunit 12b-like isoform X1.	Uncharacterized protein LOC103709216.	0.541
LOC103697462	LOC103710115	A0A2H3X2Z7	A0A2H3Y603	Transcription initiation factor TFIID subunit 12b-like isoform X1.	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	0.789
LOC103697462	LOC103710945	A0A2H3X2Z7	A0A2H3Y9A2	Transcription initiation factor TFIID subunit 12b-like isoform X1.	LOW QUALITY PROTEIN: transformation/transcription domain-associated protein-like; Belongs to the PI3/PI4-kinase family.	0.864
LOC103697462	LOC103713576	A0A2H3X2Z7	A0A3Q0I7G2	Transcription initiation factor TFIID subunit 12b-like isoform X1.	Transcription initiation factor TFIID subunit 6-like.	0.977
LOC103697462	LOC103714290	A0A2H3X2Z7	A0A2H3YK41	Transcription initiation factor TFIID subunit 12b-like isoform X1.	Aluminum-activated malate transporter 1-like.	0.541
LOC103697462	LOC103715895	A0A2H3X2Z7	A0A2H3YPG5	Transcription initiation factor TFIID subunit 12b-like isoform X1.	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	0.789
LOC103697462	LOC103716004	A0A2H3X2Z7	A0A2H3YPT3	Transcription initiation factor TFIID subunit 12b-like isoform X1.	Aluminum-activated malate transporter 9-like.	0.541
LOC103697462	LOC103717559	A0A2H3X2Z7	A0A2H3YUV1	Transcription initiation factor TFIID subunit 12b-like isoform X1.	SAGA-associated factor 29 homolog A-like.	0.919
LOC103697462	LOC103718537	A0A2H3X2Z7	A0A2H3YYB5	Transcription initiation factor TFIID subunit 12b-like isoform X1.	Aluminum-activated malate transporter 9-like.	0.541
LOC103697462	LOC103719482	A0A2H3X2Z7	A0A2H3Z1F4	Transcription initiation factor TFIID subunit 12b-like isoform X1.	Aluminum-activated malate transporter 10-like.	0.541
LOC103697462	LOC103721031	A0A2H3X2Z7	A0A3Q0IFY2	Transcription initiation factor TFIID subunit 12b-like isoform X1.	Transformation/transcription domain-associated protein-like; Belongs to the PI3/PI4-kinase family.	0.864
LOC103697462	LOC103721858	A0A2H3X2Z7	A0A2H3Z9G8	Transcription initiation factor TFIID subunit 12b-like isoform X1.	Aluminum-activated malate transporter 10-like.	0.541