(36 nodes) SWI/SNF superfamily-type complex network (Fusarium nygamai)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FNYG_00328	HMG box domain-containing protein. (270 aa)
	FNYG_00530	PAPA-1 domain-containing protein. (405 aa)
	FNYG_00678	Uncharacterized protein. (938 aa)
	FNYG_01793	Uncharacterized protein. (1909 aa)
	FNYG_02247	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. (458 aa)
	FNYG_02137	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. (473 aa)
	FNYG_02321	Uncharacterized protein. (268 aa)
	FNYG_02392	Uncharacterized protein; Belongs to the actin family. (749 aa)
	FNYG_02394	YL1_C domain-containing protein. (187 aa)
	FNYG_03059	NET domain-containing protein. (243 aa)
	FNYG_03507	Uncharacterized protein. (657 aa)
	FNYG_03811	Uncharacterized protein. (599 aa)
	FNYG_05907	Uncharacterized protein. (1116 aa)
	FNYG_06465	Uncharacterized protein. (704 aa)
	FNYG_07442	Uncharacterized protein. (278 aa)
	FNYG_08413	Uncharacterized protein. (1421 aa)
	FNYG_08245	Actin-related protein 8; Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex. Belongs to the actin family. (741 aa)
	FNYG_08965	Uncharacterized protein. (633 aa)
	FNYG_08956	Uncharacterized protein. (522 aa)
	FNYG_12662	Uncharacterized protein. (205 aa)
	FNYG_12546	Uncharacterized protein. (364 aa)
	FNYG_12457	Uncharacterized protein. (361 aa)
	FNYG_12174	Zn(2)-C6 fungal-type domain-containing protein. (699 aa)
	FNYG_11555	YL1_C domain-containing protein. (845 aa)
	FNYG_10352	Uncharacterized protein; Belongs to the actin family. (784 aa)
	FNYG_09465	Uncharacterized protein. (274 aa)
	FNYG_09149	Uncharacterized protein. (580 aa)
	FNYG_15233	Uncharacterized protein. (142 aa)
	FNYG_14500	Uncharacterized protein. (536 aa)
	FNYG_14452	Uncharacterized protein; Belongs to the actin family. (442 aa)
	FNYG_14355	Uncharacterized protein. (672 aa)
	FNYG_13464	Uncharacterized protein. (682 aa)
	FNYG_13405	Uncharacterized protein. (702 aa)
	FNYG_13171	SWIB domain-containing protein. (500 aa)
	FNYG_12785	Uncharacterized protein. (78 aa)
	FNYG_12693	ARID domain-containing protein. (1064 aa)

Your Current Organism:

Fusarium nygamai

NCBI taxonomy Id: 42673
Other names: ATCC 58555, BBA 69862, CBS 749.97, DAOM 225148, F. nygamai, Gibberella nygamai, IMI 375354, NRRL 13448

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FNYG_00328	FNYG_00678	A0A2K0WVM2	A0A2K0WTK5	HMG box domain-containing protein.	Uncharacterized protein.	0.522
FNYG_00328	FNYG_01793	A0A2K0WVM2	A0A2K0WQZ6	HMG box domain-containing protein.	Uncharacterized protein.	0.957
FNYG_00328	FNYG_02137	A0A2K0WVM2	A0A2K0WQG4	HMG box domain-containing protein.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.923
FNYG_00328	FNYG_02247	A0A2K0WVM2	A0A2K0WQS0	HMG box domain-containing protein.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.969
FNYG_00328	FNYG_02392	A0A2K0WVM2	A0A2K0WPP5	HMG box domain-containing protein.	Uncharacterized protein; Belongs to the actin family.	0.914
FNYG_00328	FNYG_02394	A0A2K0WVM2	A0A2K0WPN9	HMG box domain-containing protein.	YL1_C domain-containing protein.	0.868
FNYG_00328	FNYG_03059	A0A2K0WVM2	A0A2K0WMI9	HMG box domain-containing protein.	NET domain-containing protein.	0.556
FNYG_00328	FNYG_03507	A0A2K0WVM2	A0A2K0WLN2	HMG box domain-containing protein.	Uncharacterized protein.	0.931
FNYG_00328	FNYG_03811	A0A2K0WVM2	A0A2K0WJX4	HMG box domain-containing protein.	Uncharacterized protein.	0.451
FNYG_00328	FNYG_05907	A0A2K0WVM2	A0A2K0WEU5	HMG box domain-containing protein.	Uncharacterized protein.	0.752
FNYG_00328	FNYG_08245	A0A2K0WVM2	A0A2K0W7N3	HMG box domain-containing protein.	Actin-related protein 8; Probably involved in transcription regulation via its interaction with the INO80 complex, a chromatin remodeling complex. Belongs to the actin family.	0.975
FNYG_00328	FNYG_09149	A0A2K0WVM2	A0A2K0W4S5	HMG box domain-containing protein.	Uncharacterized protein.	0.568
FNYG_00328	FNYG_10352	A0A2K0WVM2	A0A2K0W1Z3	HMG box domain-containing protein.	Uncharacterized protein; Belongs to the actin family.	0.632
FNYG_00328	FNYG_12693	A0A2K0WVM2	A0A2K0VVA2	HMG box domain-containing protein.	ARID domain-containing protein.	0.534
FNYG_00328	FNYG_13464	A0A2K0WVM2	A0A2K0V9M3	HMG box domain-containing protein.	Uncharacterized protein.	0.451
FNYG_00530	FNYG_01793	A0A2K0WVJ7	A0A2K0WQZ6	PAPA-1 domain-containing protein.	Uncharacterized protein.	0.555
FNYG_00530	FNYG_02137	A0A2K0WVJ7	A0A2K0WQG4	PAPA-1 domain-containing protein.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.608
FNYG_00530	FNYG_02247	A0A2K0WVJ7	A0A2K0WQS0	PAPA-1 domain-containing protein.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.607
FNYG_00530	FNYG_02321	A0A2K0WVJ7	A0A2K0WPY3	PAPA-1 domain-containing protein.	Uncharacterized protein.	0.422
FNYG_00530	FNYG_02392	A0A2K0WVJ7	A0A2K0WPP5	PAPA-1 domain-containing protein.	Uncharacterized protein; Belongs to the actin family.	0.465