(15 nodes) 90S preribosome, and Regulation of transcription by RNA polymerase I network (Globisporangium ultimum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	K3W5I7_GLOUD	Uncharacterized protein. (1041 aa)
	K3W8E3_GLOUD	Utp12 domain-containing protein. (123 aa)
	K3WBL1_GLOUD	Uncharacterized protein. (1160 aa)
	K3WH81_GLOUD	WD_REPEATS_REGION domain-containing protein. (641 aa)
	K3WHM9_GLOUD	Uncharacterized protein. (468 aa)
	K3WHQ1_GLOUD	Uncharacterized protein. (488 aa)
	K3WK67_GLOUD	Brix domain-containing protein. (293 aa)
	K3WQG2_GLOUD	WD_REPEATS_REGION domain-containing protein. (614 aa)
	K3WRP8_GLOUD	WD_REPEATS_REGION domain-containing protein. (519 aa)
	K3WS75_GLOUD	Uncharacterized protein. (380 aa)
	K3WTZ3_GLOUD	Bms1-type G domain-containing protein. (1193 aa)
	K3X601_GLOUD	WD_REPEATS_REGION domain-containing protein. (725 aa)
	K3X8R7_GLOUD	WD_REPEATS_REGION domain-containing protein. (474 aa)
	K3X9M4_GLOUD	Uncharacterized protein. (674 aa)
	K3XAW6_GLOUD	BP28CT domain-containing protein. (2167 aa)

Your Current Organism:

Globisporangium ultimum

NCBI taxonomy Id: 431595
Other names: G. ultimum DAOM BR144, Globisporangium ultimum DAOM BR144

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
K3W5I7_GLOUD	K3W8E3_GLOUD	K3W5I7	K3W8E3	Uncharacterized protein.	Utp12 domain-containing protein.	0.999
K3W5I7_GLOUD	K3WBL1_GLOUD	K3W5I7	K3WBL1	Uncharacterized protein.	Uncharacterized protein.	0.999
K3W5I7_GLOUD	K3WH81_GLOUD	K3W5I7	K3WH81	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.998
K3W5I7_GLOUD	K3WHM9_GLOUD	K3W5I7	K3WHM9	Uncharacterized protein.	Uncharacterized protein.	0.999
K3W5I7_GLOUD	K3WHQ1_GLOUD	K3W5I7	K3WHQ1	Uncharacterized protein.	Uncharacterized protein.	0.997
K3W5I7_GLOUD	K3WK67_GLOUD	K3W5I7	K3WK67	Uncharacterized protein.	Brix domain-containing protein.	0.997
K3W5I7_GLOUD	K3WQG2_GLOUD	K3W5I7	K3WQG2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999
K3W5I7_GLOUD	K3WRP8_GLOUD	K3W5I7	K3WRP8	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999
K3W5I7_GLOUD	K3WS75_GLOUD	K3W5I7	K3WS75	Uncharacterized protein.	Uncharacterized protein.	0.997
K3W5I7_GLOUD	K3WTZ3_GLOUD	K3W5I7	K3WTZ3	Uncharacterized protein.	Bms1-type G domain-containing protein.	0.998
K3W5I7_GLOUD	K3X601_GLOUD	K3W5I7	K3X601	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.999
K3W5I7_GLOUD	K3X8R7_GLOUD	K3W5I7	K3X8R7	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.997
K3W5I7_GLOUD	K3X9M4_GLOUD	K3W5I7	K3X9M4	Uncharacterized protein.	Uncharacterized protein.	0.999
K3W5I7_GLOUD	K3XAW6_GLOUD	K3W5I7	K3XAW6	Uncharacterized protein.	BP28CT domain-containing protein.	0.999
K3W8E3_GLOUD	K3W5I7_GLOUD	K3W8E3	K3W5I7	Utp12 domain-containing protein.	Uncharacterized protein.	0.999
K3W8E3_GLOUD	K3WBL1_GLOUD	K3W8E3	K3WBL1	Utp12 domain-containing protein.	Uncharacterized protein.	0.998
K3W8E3_GLOUD	K3WH81_GLOUD	K3W8E3	K3WH81	Utp12 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.998
K3W8E3_GLOUD	K3WHM9_GLOUD	K3W8E3	K3WHM9	Utp12 domain-containing protein.	Uncharacterized protein.	0.999
K3W8E3_GLOUD	K3WHQ1_GLOUD	K3W8E3	K3WHQ1	Utp12 domain-containing protein.	Uncharacterized protein.	0.996
K3W8E3_GLOUD	K3WK67_GLOUD	K3W8E3	K3WK67	Utp12 domain-containing protein.	Brix domain-containing protein.	0.983