9 items (Oryza punctata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0JD93	Uncharacterized protein. (422 aa)
	A0A0E0JZU7	LsmAD domain-containing protein. (591 aa)
	A0A0E0K2X2	Uncharacterized protein; Belongs to the DEAD box helicase family. (511 aa)
	A0A0E0K869	2-Hacid_dh_C domain-containing protein. (637 aa)
	A0A0E0KT73	Uncharacterized protein; Belongs to the DEAD box helicase family. (496 aa)
	A0A0E0KVI3	Uncharacterized protein. (441 aa)
	A0A0E0LBW4	Uncharacterized protein. (691 aa)
	A0A0E0M9F6	Uncharacterized protein; Belongs to the DEAD box helicase family. (546 aa)
	A0A0E0MA34	2-Hacid_dh_C domain-containing protein. (650 aa)

Your Current Organism:

Oryza punctata

NCBI taxonomy Id: 4537
Other names: O. punctata, Oryza punctata Kotschy ex Steud.

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0JD93	A0A0E0JZU7	Uncharacterized protein.	LsmAD domain-containing protein.	0.507
A0A0E0JD93	A0A0E0K2X2	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.896
A0A0E0JD93	A0A0E0KT73	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.896
A0A0E0JD93	A0A0E0M9F6	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.896
A0A0E0JZU7	A0A0E0JD93	LsmAD domain-containing protein.	Uncharacterized protein.	0.507
A0A0E0JZU7	A0A0E0K2X2	LsmAD domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.916
A0A0E0JZU7	A0A0E0KT73	LsmAD domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.916
A0A0E0JZU7	A0A0E0LBW4	LsmAD domain-containing protein.	Uncharacterized protein.	0.507
A0A0E0JZU7	A0A0E0M9F6	LsmAD domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.916
A0A0E0K2X2	A0A0E0JD93	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.896
A0A0E0K2X2	A0A0E0JZU7	Uncharacterized protein; Belongs to the DEAD box helicase family.	LsmAD domain-containing protein.	0.916
A0A0E0K2X2	A0A0E0KT73	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.841
A0A0E0K2X2	A0A0E0LBW4	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.896
A0A0E0K2X2	A0A0E0M9F6	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.852
A0A0E0KT73	A0A0E0JD93	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.896
A0A0E0KT73	A0A0E0JZU7	Uncharacterized protein; Belongs to the DEAD box helicase family.	LsmAD domain-containing protein.	0.916
A0A0E0KT73	A0A0E0K2X2	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.841
A0A0E0KT73	A0A0E0LBW4	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.896
A0A0E0KT73	A0A0E0M9F6	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.870
A0A0E0LBW4	A0A0E0JZU7	Uncharacterized protein.	LsmAD domain-containing protein.	0.507