(10 nodes) Mixed, incl. Splicing factor Yju2, and mRNA splicing factor SYF2 network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A194YQD0	COX assembly mitochondrial protein. (119 aa)
	A0A1B6QEE4	Uncharacterized protein. (1285 aa)
	A0A1W0VY71	Uncharacterized protein. (306 aa)
	C5WXK8_SORBI	WD_REPEATS_REGION domain-containing protein. (572 aa)
	C5WZE4_SORBI	WD_REPEATS_REGION domain-containing protein. (628 aa)
	C5XF95_SORBI	MI domain-containing protein. (792 aa)
	C5XPH3_SORBI	Uncharacterized protein. (331 aa)
	C5YJ72_SORBI	Cir_N domain-containing protein. (540 aa)
	C5YMK6_SORBI	Slu7 domain-containing protein. (535 aa)
	C5Z9E4_SORBI	Uncharacterized protein. (471 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A194YQD0	A0A1B6QEE4	A0A194YQD0	A0A1B6QEE4	COX assembly mitochondrial protein.	Uncharacterized protein.	0.957
A0A194YQD0	A0A1W0VY71	A0A194YQD0	A0A1W0VY71	COX assembly mitochondrial protein.	Uncharacterized protein.	0.820
A0A194YQD0	C5WXK8_SORBI	A0A194YQD0	C5WXK8	COX assembly mitochondrial protein.	WD_REPEATS_REGION domain-containing protein.	0.932
A0A194YQD0	C5WZE4_SORBI	A0A194YQD0	C5WZE4	COX assembly mitochondrial protein.	WD_REPEATS_REGION domain-containing protein.	0.680
A0A194YQD0	C5XF95_SORBI	A0A194YQD0	C5XF95	COX assembly mitochondrial protein.	MI domain-containing protein.	0.880
A0A194YQD0	C5XPH3_SORBI	A0A194YQD0	C5XPH3	COX assembly mitochondrial protein.	Uncharacterized protein.	0.820
A0A194YQD0	C5YJ72_SORBI	A0A194YQD0	C5YJ72	COX assembly mitochondrial protein.	Cir_N domain-containing protein.	0.944
A0A194YQD0	C5YMK6_SORBI	A0A194YQD0	C5YMK6	COX assembly mitochondrial protein.	Slu7 domain-containing protein.	0.942
A0A194YQD0	C5Z9E4_SORBI	A0A194YQD0	C5Z9E4	COX assembly mitochondrial protein.	Uncharacterized protein.	0.913
A0A1B6QEE4	A0A194YQD0	A0A1B6QEE4	A0A194YQD0	Uncharacterized protein.	COX assembly mitochondrial protein.	0.957
A0A1B6QEE4	A0A1W0VY71	A0A1B6QEE4	A0A1W0VY71	Uncharacterized protein.	Uncharacterized protein.	0.971
A0A1B6QEE4	C5WXK8_SORBI	A0A1B6QEE4	C5WXK8	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.981
A0A1B6QEE4	C5WZE4_SORBI	A0A1B6QEE4	C5WZE4	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.962
A0A1B6QEE4	C5XF95_SORBI	A0A1B6QEE4	C5XF95	Uncharacterized protein.	MI domain-containing protein.	0.974
A0A1B6QEE4	C5XPH3_SORBI	A0A1B6QEE4	C5XPH3	Uncharacterized protein.	Uncharacterized protein.	0.971
A0A1B6QEE4	C5YJ72_SORBI	A0A1B6QEE4	C5YJ72	Uncharacterized protein.	Cir_N domain-containing protein.	0.991
A0A1B6QEE4	C5YMK6_SORBI	A0A1B6QEE4	C5YMK6	Uncharacterized protein.	Slu7 domain-containing protein.	0.991
A0A1B6QEE4	C5Z9E4_SORBI	A0A1B6QEE4	C5Z9E4	Uncharacterized protein.	Uncharacterized protein.	0.978
A0A1W0VY71	A0A194YQD0	A0A1W0VY71	A0A194YQD0	Uncharacterized protein.	COX assembly mitochondrial protein.	0.820
A0A1W0VY71	A0A1B6QEE4	A0A1W0VY71	A0A1B6QEE4	Uncharacterized protein.	Uncharacterized protein.	0.971

page 1 of 5

Server load: low (36%) [HD]

Permalink

Network

Fusion

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Neighborhood

© STRING Consortium 2025

Credits

Access

Info

About